Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00437 ATGATGGGATCAATTTCATGCTTAGGAGGGATGCAAGCAATTTTCATTTCTTATTCTTACGAGTTAGGACGAAGAGTTGAACCTATTTCCGCTCTGACCGAAGAGACAGAGACAGAAGCTGCCCGCCAAAAAGAGGCAGTGCCAAGCAACCGAGAAAGCGAAACTGCGATCGATTCGAGCGAGGCTCTATTCCTTGTTTGGATTGAAGTAAAGATGAGTACCATGAAATTTTGCCGCCGATGCAACAACGTTCTGTACCCTACGGAGGACAAGGAGGACAAGCTTCTTCTCTATGCTTGCCGCAACTGCACTCACGAGGAGATTGCAGACAGTAACATTGTCTATAGAAATAAGATACATCATTCTGTTCAACAGCGCACTCGAGAGCTGGGAAATGTAGCTGCAGATCCAACACTTCCTCGCACCAAGTCTGTTCGCTGCTCTCAATGTAATCACGGAGAAGCTGTCTTTTTCAAGGCACCAACCAAAGGGGAAGAAGGTATGGCACTCATTTTTGTTTGCTGCAACCCAACTTGTGGCAACCGTTGGAGAGACTAG 558 0.4659 MMGSISCLGGMQAIFISYSYELGRRVEPISALTEETETEAARQKEAVPSNRESETAIDSSEALFLVWIEVKMSTMKFCRRCNNVLYPTEDKEDKLLLYACRNCTHEEIADSNIVYRNKIHHSVQQRTRELGNVAADPTLPRTKSVRCSQCNHGEAVFFKAPTKGEEGMALIFVCCNPTCGNRWRD 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00437 185 SMART rpol9cneu 76 129 IPR001529 GO:0006351
Pumo4g00437 185 MobiDBLite consensus disorder prediction 33 54 - -
Pumo4g00437 185 Pfam Transcription factor S-II (TFIIS) 146 184 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pumo4g00437 185 Pfam RNA polymerases M/15 Kd subunit 75 111 IPR001529 GO:0006351
Pumo4g00437 185 MobiDBLite consensus disorder prediction 33 51 - -
Pumo4g00437 185 SUPERFAMILY Zinc beta-ribbon 72 119 - -
Pumo4g00437 185 ProSiteProfiles Zinc finger TFIIS-type profile. 143 184 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pumo4g00437 185 SMART Cys4_2 145 185 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pumo4g00437 185 FunFam DNA-directed RNA polymerase subunit 118 185 - -
Pumo4g00437 185 PANTHER DNA-DIRECTED RNA POLYMERASE 72 184 IPR012164 GO:0003899|GO:0006351
Pumo4g00437 185 CDD Zn-ribbon_RPB9 135 184 IPR034012 GO:0006379
Pumo4g00437 185 Gene3D - 72 117 - -
Pumo4g00437 185 FunFam DNA-directed RNA polymerase II subunit RPB9 72 117 - -
Pumo4g00437 185 Gene3D - 118 185 - -
Pumo4g00437 185 SUPERFAMILY Zinc beta-ribbon 124 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00437 Pumo-Chr4 5868498 5879910 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00437 K03017 - gmx:100806190 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00437 4 5868498 5879910 Pumo4g00437 4 5868498 5879910 ECH
Pumo4g00437 4 5868498 5879910 Pumo2g01301 2 19126690 19129464 PCT