Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00422 ATGACCATCGACTTAGATTCGATCGCTCGCAGAGTCGAGGTTGATAATCGCATTCCCCTCCGTTATTACTATCGGATTGCCGATAACCTCCTCAAGCAGGCAAGTATCTACCGGGAGGAGAATAATGTAGTTGACTTGTACATCATTCTCCTTAGATTTTTAAGTTTGGTTTCTGAAACTATACCATATCATCGAGAGTATCAAGCTTCACTGCCCAACGAAAGAGCAACATATAAGAAGAGATCACGAGCTGTATTGGATGAGCTTGAATCTTTGAAGCCCGAATTTAAACGCCGGGTGGAAAAATTGAATGACTCACATGTAAAAGCTCCATTGCCTGAAGAAAATGGCTTCAATAAGGCTTTGCAGAGTTCAGTGAATTCAACTTTGGAATGGCCGGCTGTCAATAAAAGTAATAACTTAAGCATGGATTTTAAACAGCCTGCTGCTGGATTTGGTTCTCACTCTTCATGGAATTATAATAATATGTTATCTTCAGATTCCAGGCCTATTGACAAGCAGTTTCAGAAACTATCTCTTAGTCTACCCCCTCCAAATAAGGAGACTTTGTCCAGACACTCATTTTTAGGACCAAATGGCCTTCGGGGTCAATGGCTTGGACCTAGTGCAGAAATAAAGGTTCAATATCCAAGCAGTAGTGATCTCACACATGCCAAGGATTCAAGCCTGAATCAGGCTGGGCTATATGATCTTGTGGCAATTAAAGATGGCGATCAAGGACCAGTTACATCCACAATGGACTCAGTTCTCTCCTTGGATGATGGAAGATGGCTGCGTCCTGCTGTTGAGTCCTGTTCTCCTGTTGTAACTGAATCAAGGGAGGACCCCTTACAATTGCTCAACATCAAGCAACCTTTGCCGCCTCCTGTTCTTGCTCAGGTGTACCCAGAACATGCCCCTATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCAGCTAATTCATCTCATGATTCTGGACCGGGTTCAACTACATATCAACACCTACATATTCCTGTCAAAATGATGGAAGATTTTTTGAGACTAGCTTCGGAAAACACACGGAAGAACTTAGAGACATGTGGTGTTCTTGCAGGGTCCCTGAAAAAAAGGGTATTCCATATCACGACACTTATAATCCCAAAGCAGGAATCAACTTCAGACTCGTGTCAAACATTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTTTTTCCTTTGGGTTGGATACATACACACCCGTCACAGACTTGTTTCATGTCTTCTGTCGATCTACACACTCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCTATTGTCATGGCCCCTACAGATACTTCAAGTCCACATGGCATATTTCATCTGTCTGATCCGGGTGGTGTGTCTGTAATTCGTAACTGTCAACAACGTGGATTTCATCCCCATGAGGAGCCTGAGGATGGAAGACCAATATATGAGCACTGTTCTCATGTCTATATGAATGCTAACTTGAAGTTCGATGTTGTTGACCTTCGAGAGCGATGA 1542 0.428 MTIDLDSIARRVEVDNRIPLRYYYRIADNLLKQASIYREENNVVDLYIILLRFLSLVSETIPYHREYQASLPNERATYKKRSRAVLDELESLKPEFKRRVEKLNDSHVKAPLPEENGFNKALQSSVNSTLEWPAVNKSNNLSMDFKQPAAGFGSHSSWNYNNMLSSDSRPIDKQFQKLSLSLPPPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSSDLTHAKDSSLNQAGLYDLVAIKDGDQGPVTSTMDSVLSLDDGRWLRPAVESCSPVVTESREDPLQLLNIKQPLPPPVLAQVYPEHAPIPPSKVADPRPGPANSSHDSGPGSTTYQHLHIPVKMMEDFLRLASENTRKNLETCGVLAGSLKKRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGRPIYEHCSHVYMNANLKFDVVDLRER 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00422 513 SMART pad1_6 336 464 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pumo4g00422 513 SUPERFAMILY USP8 N-terminal domain-like 4 105 - -
Pumo4g00422 513 FunFam AMSH-like ubiquitin thioesterase 3 322 513 - -
Pumo4g00422 513 MobiDBLite consensus disorder prediction 300 316 - -
Pumo4g00422 513 PANTHER AMSH-LIKE PROTEASE 3 511 - -
Pumo4g00422 513 FunFam AMSH-like ubiquitin thioesterase 3 1 116 - -
Pumo4g00422 513 SUPERFAMILY JAB1/MPN domain 336 467 - -
Pumo4g00422 513 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 333 440 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pumo4g00422 513 Coils Coil 86 106 - -
Pumo4g00422 513 Gene3D - 2 125 - -
Pumo4g00422 513 Gene3D Cytidine Deaminase, domain 2 321 513 - -
Pumo4g00422 513 ProSiteProfiles MPN domain profile. 337 467 IPR037518 -
Pumo4g00422 513 Pfam USP8 dimerisation domain 4 99 IPR015063 -
Pumo4g00422 513 CDD MPN_AMSH_like 334 511 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Pumo4g00422 513 MobiDBLite consensus disorder prediction 300 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00422 Pumo-Chr4 5612803 5620982 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00422 K11866 - gmx:100812784 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00422 4 5612803 5620982 Pumo4g00422 4 5612803 5620982 ECH