Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03248 ATGGAATTTGCAAGGACCATGTTCTATTCGTCTCCACCGTTTCCTCCAAGAACTCACCCTTGGAACACTCTTCCCTCGTCTTCTTCTACTTCCGTTTTGATGCTTCGTGAACAAGCTTCCCCTACAGTTGCCTCTTGGTCTTCTAATTATTCAGCTCAGAATTTTCCTGCCTCAGTTCTTTTACAAGAGCAGCGTGATGAAAATAGGCCTCTTCTGCACATGTCTAAGGAAGACAAGACATCGCAGGCAATTTTAAATACAAGGCAGATGGATATGGCCACGGTTCATGAAGAGAATAACACTGGAAATGCTGATCAGGTAGTGCTTGACTTTAGGAAGCACCTGCATCAGTGGCCTCATTTACAGAACTTATTAACTTCCTCACAAACAGGAGAAATTGCTGCTTCAACTCTACAGCATGTTTCTGTTGACTTGGAGAGGCATACAAATGGCGTGCAATGTAATGGAGTTTCTCTTGCTAAGAAAGCTTTGTCTACTTCAAAACAAGCATCCTCAGTAGTTGAAGACTTGAAATCAATTAAAGCCAATGATGATTCAGTTCCTTTTGGTCTGGCCTCTACTAGCTTGGCTGACCCTTCAATTGGAAGAAATAAAACTGTGAGGTCAACACGCCTTCTAGAGAGACGATCAAAACAAAGAAAACTACCTAAGTCGAAAGTTAAAGACGATGAAACCTACCTTGCAAGAAAGGATGATGCACAAGAAAGGCTACGCGTAAAAAAGAAGACAAATGAAGAATTTGATCAAAATGATTCCTTGCGCTTGTTCTTGTGGGCTCCTGAAACAAAACAACTTTTGACACTTGAACAAGAATCTCAACTGATTTCTCAGATACAGGACTTATTTAGATTGGAAGAAGTGAAGACCAAGCTTCAATCTCAATTTGGAAGGGAACCAACTATTGCTGAATGGGCTGAGGGTGCAGGACTTAATTGTCGAAGGCTGCATGCACAGCTTCGTTGTGGTAACAGAAGCAGAGAAAAGCTGATTCAAGCAAATTTACGCATGGTAGTCCATGTTGCCAAAAGTTATCAGGGGCGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGAAGTATGGGTCTTATGAAGAGTGTTGAAAAATTCAATCCCCTAGCTGGTAGTCGATTTGGTAATTATGCATTCTGGTGGATAAGGCAAGCAATAAGGAAGGCGGTGTTTCGACATTCAAGGACAATCCGTCTACCGGAGAAGGTATATATCCTATTGGGCAAGGTAATGGAGGCAAAGAAATTGTACATTCAGGAAGGAAATCTTCACCCAACTAAAGAAGAATTAGCAAGAAGGGTAGGAATTACAGTAGAAAAGATTGACAAATTGCTGTTTTCTGCAAGAATTCCAATTTCTATGCAGCAAACTGTGTGGACTGACCAAGATACAACTTTCCAGGAGATTACTGCAGACCCCACAGTTGAGGCCACAGGTGTGACTGTTGAAAAACAGCTTATGAGGCGGCATGTTCTCAATGTCCTAAGTATCTTACACCCCAAAGAGAGGAGAATTATCCGGTTAAGATATGGTTTTGAGGATGGCGAACAGAAATCTTTATCAGAAATTGGAGACATATTTGGTTTGTCTAAGGAAAGGGTTCGTCAATTAGAGATCCGAGCACTATACAAGCTGAAGAAGTGCCTTGCCAAACAAGGACTTGATGCTTATGTAGACTTGCTTCTATAG 1719 0.4171 MEFARTMFYSSPPFPPRTHPWNTLPSSSSTSVLMLREQASPTVASWSSNYSAQNFPASVLLQEQRDENRPLLHMSKEDKTSQAILNTRQMDMATVHEENNTGNADQVVLDFRKHLHQWPHLQNLLTSSQTGEIAASTLQHVSVDLERHTNGVQCNGVSLAKKALSTSKQASSVVEDLKSIKANDDSVPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKLPKSKVKDDETYLARKDDAQERLRVKKKTNEEFDQNDSLRLFLWAPETKQLLTLEQESQLISQIQDLFRLEEVKTKLQSQFGREPTIAEWAEGAGLNCRRLHAQLRCGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVYILLGKVMEAKKLYIQEGNLHPTKEELARRVGITVEKIDKLLFSARIPISMQQTVWTDQDTTFQEITADPTVEATGVTVEKQLMRRHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLAKQGLDAYVDLLL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03248 572 Gene3D - 409 486 IPR036388 -
Pumo3g03248 572 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 409 482 IPR013324 -
Pumo3g03248 572 ProSitePatterns Sigma-70 factors family signature 2. 529 555 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo3g03248 572 PRINTS Major sigma-70 factor signature 529 544 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo3g03248 572 PRINTS Major sigma-70 factor signature 508 520 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo3g03248 572 PRINTS Major sigma-70 factor signature 544 555 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo3g03248 572 PRINTS Major sigma-70 factor signature 360 373 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo3g03248 572 PRINTS Major sigma-70 factor signature 384 392 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pumo3g03248 572 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 469 568 IPR013324 -
Pumo3g03248 572 PIRSF Sigma_factor_SigC 1 572 IPR016262 -
Pumo3g03248 572 NCBIfam sigma-70 family RNA polymerase sigma factor 332 559 IPR014284 GO:0003700|GO:0006352|GO:0006355
Pumo3g03248 572 Pfam Sigma-70, region 4 505 557 IPR007630 GO:0003700|GO:0006352|GO:0006355
Pumo3g03248 572 Pfam Sigma-70 region 2 336 405 IPR007627 GO:0003700|GO:0006352|GO:0006355
Pumo3g03248 572 Gene3D - 491 571 IPR036388 -
Pumo3g03248 572 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 154 568 - -
Pumo3g03248 572 Pfam Sigma-70 region 3 417 484 IPR007624 GO:0003700|GO:0006352|GO:0006355
Pumo3g03248 572 CDD Sigma70_r4 498 556 - -
Pumo3g03248 572 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 256 406 IPR013325 GO:0003700|GO:0006352|GO:0006355
Pumo3g03248 572 Gene3D - 161 405 - -
Pumo3g03248 572 Coils Coil 237 257 - -
Pumo3g03248 572 ProSitePatterns Sigma-70 factors family signature 1. 360 373 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03248 Pumo-Chr3 59864923 59870171 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03248 - - gmx:100306289 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03248 3 59864923 59870171 Pumo3g03248 3 59864923 59870171 ECH
Pumo5g03064 5 78800898 78804929 Pumo3g03248 3 59864923 59870171 PCT