Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02341 ATGGTAGGCCCCTCCAGCGCCGGCGATCGTAGGGGACTTAGAATAGCTGTCGTGGGCGACGGAGCCACCGGAAAATCCACACTCATAGCCGCAATGGCGTCGGAGTCTTTCCCCAAGTCCGTTCCGCCCGTGCTTCCCCCCACTCGCTTGCCCCATAATCTCTTCCCCGATTCTGTTCCTCTTACCCTCATTGACACACCTTCCAGCTTGGCAAAACAAGGCGCGCGCAATGAAGAATTGAAGCAAGCTGATGCAGTGGTTTTAACCTATGCTTGTGATGAACCAGGTAGCTTTGAGCGTGTGAGAACTTACTGGCTCCCTGAACTGCAGAAGTTGGAGGTGAAGGCACCTGTAATTGTGGTTGGTTGCAAGCTTGACCTGCGGGACGAAAACCAGCTAGTGAGCTTAGAGAGTCTCACCACTCATATAATGAAACAGTTCACTGAAATTGTCACATGTGTTGAGTGCTCTGCAGCTACACTTTATCAGGTCCCTCAAGTTTTTTATTTTGCCCAAAAAGCAGTACTGCATCCAGTAGATCCTTTGTTTGATTATAAAAGGCATGCTTTAACAGATCGATGTGTGAGGGCGTTAAGAAGAATATTTGTTCTTTGTGATCATGACATGAATGGTGCCCTCAATGATGAAGAACTAAATGAGTTTCAGGTTAGATGCTTCAATGCACCATTGCAGCCATCTGAAATAGCAACAATCAAAACAATTGTAGAGCAGAAAGTACCTGAAGGAGTCAACTCTATTGGTCTTACCTTTCCAGGCTTTATTTATGTCCATAATATGTTTCTAAAGAAAGGGCGAACAGAGACATTGTGGGCTGTTCTAAGAAAGTTTGGATATGATAATGATTTAAAACTCCGGGATGATTTCCTTCCAGTTCCATCTAAGCATGCTTCTGATCAGAGTGTGGAGCTGACAGGTGACGCTGTAGAATTTCTGAATGGTATCTTTCGATTGTTAGATACAGATAAAGATCGATTCCTACGACCTGTTGAAGTTGATAAGCTATTTGATACTGCTCCGGAAAGTCCATGGAACGATGCTCCATATAAGGATGCAGCAGAGAAAACTGATATGGGCTATATCTCTCTGAATGGATTTCTATCTCAGTGGGCCCTCATGACATTACTTGATCCACAACGTAGCTTGGCTAATTTGATTTACATTGGATATAATGGTAATCCTGCTGCAGCGCTCCGTGTCACTCGTAGAAGATCAGTAGATCGCAAGAAGCAAACTACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCTAAACATGCTGGGAAATCTGCTTTGCTGTATTCATTACTGGGAAGGCCTTTCTCAAATAATTATTCTCCAACAACAGTTGAGCAGTATGCGGCAAATGTCATTGAACTAAAAGGGGTAACTAGGAAAATTCTCATATTGCGCGAGATACCTGAGGATGGAATATTGGAATTTTTGTCAAATCAGGATTGTTTGGCTGCATGTGATGTTGCTGTTTTTGTGTATGACAGCTCAGATGAATATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGTTAGACAAGGAGAACTAACTGGTTATAGAACCCCTTGCCTCCTTATCGCTGCTAAGGATGATTTAACTCCATTCCCAAGGGGGGTACTAGATTCAGTTAAGGTTACTCAGGAATTGGGAATAAAGGCACCTATTCACGTAAGTATGAAGTTAGGTGATTCAAGTAATGTGTATAATAAAATAATTAATGCTGCAGAACACCCTCATTTGAGCATTCCAGAAACTGAGATTGCACGGAGGAAGAAGCAACACCACCAGCTTCTTCATCACTCTCTTATTTTTGCCTTAGTTGGGGCTGCTATGGCGGTTGCCGGTTTGACGGCTTGTCGTGTGCGTGCAGTGAAGAAAAATACTACTGCTTAG 1932 0.4317 MVGPSSAGDRRGLRIAVVGDGATGKSTLIAAMASESFPKSVPPVLPPTRLPHNLFPDSVPLTLIDTPSSLAKQGARNEELKQADAVVLTYACDEPGSFERVRTYWLPELQKLEVKAPVIVVGCKLDLRDENQLVSLESLTTHIMKQFTEIVTCVECSAATLYQVPQVFYFAQKAVLHPVDPLFDYKRHALTDRCVRALRRIFVLCDHDMNGALNDEELNEFQVRCFNAPLQPSEIATIKTIVEQKVPEGVNSIGLTFPGFIYVHNMFLKKGRTETLWAVLRKFGYDNDLKLRDDFLPVPSKHASDQSVELTGDAVEFLNGIFRLLDTDKDRFLRPVEVDKLFDTAPESPWNDAPYKDAAEKTDMGYISLNGFLSQWALMTLLDPQRSLANLIYIGYNGNPAAALRVTRRRSVDRKKQTTERNVFQCYVFGSKHAGKSALLYSLLGRPFSNNYSPTTVEQYAANVIELKGVTRKILILREIPEDGILEFLSNQDCLAACDVAVFVYDSSDEYSWKKSRDLLEKVVRQGELTGYRTPCLLIAAKDDLTPFPRGVLDSVKVTQELGIKAPIHVSMKLGDSSNVYNKIINAAEHPHLSIPETEIARRKKQHHQLLHHSLIFALVGAAMAVAGLTACRVRAVKKNTTA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02341 643 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Pumo3g02341 643 Pfam Ras family 428 547 IPR001806 GO:0003924|GO:0005525
Pumo3g02341 643 Gene3D - 185 289 - -
Pumo3g02341 643 FunFam Mitochondrial Rho GTPase 291 481 - -
Pumo3g02341 643 FunFam Mitochondrial Rho GTPase 488 589 - -
Pumo3g02341 643 PIRSF Miro 9 643 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Pumo3g02341 643 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Pumo3g02341 643 Gene3D - 487 588 IPR027417 -
Pumo3g02341 643 Pfam EF hand associated 229 312 IPR013567 -
Pumo3g02341 643 FunFam Mitochondrial Rho GTPase 10 180 - -
Pumo3g02341 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 595 IPR027417 -
Pumo3g02341 643 SUPERFAMILY EF-hand 181 377 IPR011992 -
Pumo3g02341 643 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Pumo3g02341 643 PRINTS Transforming protein P21 ras signature 114 127 - -
Pumo3g02341 643 PRINTS Transforming protein P21 ras signature 13 34 - -
Pumo3g02341 643 PRINTS Transforming protein P21 ras signature 153 175 - -
Pumo3g02341 643 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Pumo3g02341 643 CDD Miro2 420 599 - -
Pumo3g02341 643 SMART ras_sub_4 10 178 - -
Pumo3g02341 643 Pfam EF hand associated 350 417 IPR013566 -
Pumo3g02341 643 Gene3D - 9 180 IPR027417 -
Pumo3g02341 643 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
Pumo3g02341 643 FunFam Mitochondrial Rho GTPase 185 289 - -
Pumo3g02341 643 Gene3D - 291 481 - -
Pumo3g02341 643 PANTHER RHO FAMILY GTPASE 425 550 IPR003578 GO:0005525|GO:0007264
Pumo3g02341 643 SMART rab_sub_5 13 178 - -
Pumo3g02341 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 210 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02341 Pumo-Chr3 35641242 35647952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02341 3 640 EF-hand Containing Proteins AT3G63150 58.464 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02341 K07870 - gmx:100806983 1186.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02751 5 74232460 74241350 Pumo3g02341 3 35641242 35647952 PCT