Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01848 ATGGCTTCTTCTCCACTTCACTCACCCCTTCATTTTTCCCAGCGTCCACTTTTCACTTCCATTCGCCCCATCCCAAACCGAACTTTCATCTCCAACTCCCGCCGAACACCACGAACCCCACTCTCACTCGCTCCCATCACCCTCACTCCACCAATAATTACCTTCGCCGCGAAGTCCACGCCCACACCCTCCCCAAACGACGACGTTTTGTTGAAACACATCGTTCGCGCATTGTTCTGCTTCGCCGTTGGTTTCTCCGCGCTCGACGCATTCCGCGCTCCTCCTCCTGCATTCGCAATTGCAGCTCCATGGAGTTTACTAGTAAAGAGAGGCACCGAGGAGAAAGAGAAAGTGAAGAGTCACGAGTACTCAGACTGCACCGATAGGTTGCTGGAGACGGTGTCGTTTCTATTGAAAACCGTAGATGAAGTTCGGAGAGGGAATGGTGACGTGAGCGAGGTGGAGGCGGCGCTGGAGGCCGTGAAATCGAAGAAGGAGGAGTTGCGGAAAGAGATTAACGGGAGGCTCTACCCGGCGTTGAAGAAGCTGAGGAGGGAAAGGAAGGCGCTGTGGAAACGGTCCGGGGAGATCGTCGGTGAGATATTGAAGGCGATGGGGGAGTACGATAAATTGAAGGCGAACGAGAAGGAGAAGGCGAGGATGAAGGAGCTGGAGGAGAGTGTGGGAGTGATGGAGGATGAGTACAATGGCGTGTGGGAGAGAGTAGGGGAGATCGAGGACGCGATTTCGAGGGAGGAGACGGTGGCGTTGAGTTATGGAGTGAGGGAAATCAACTTCATAGAGAGGGAGTGTGAGCAGCTGGTGGAGAGGTTTAAACGGGAGATGGAGATCAAAAACAAGGACTTCAAAAGTTTGCCTACTGGCTCAGTTACCAGACTCTCAAAATCTGTCATTCAGAAAGATTTGGAGACTGTGCATAGAAAACAAGCAGAACAAATAATTCTTCCTAGCATTTTGGATGTTGAAGATCTTGGGCCATTCTTTCACGAAGACTCTATTAATTTTGCCCAACGTTTAACAAGAAGTCTTAAAGATTCCAGGGAGAAGCAAAGGAATTTAGAGGCTCAGATAAGAAAAAAAATGAAGAAGTTTGGCAAGGAAAAACGCAGTATTATTTATTCACCCGACGAAGAGGTGGTTAGGGGTTTTCCCGAAGTTGAGTTAAAGTGGATGTTTGGAAATAAGGAGGTTGTGCTTCCCAAAGCTGTTGGTCTCCATCTGTACCATGGTTGGAAGAAATGGCGTGAAGAAGCTAAGGCAAATTTAAAACAGAATTTAATAAAAGATGCTGAGTTTGGCAGACAATATGTGGCTGAAAGACAGGAAAGAATTCTTTTGGACCGTGACAGAGTAGTGTCAAGGACTTGGTACAATGAAGAGAAGAATAGATGGGAGATTGATCCAGTGGCTGTTCCTTATGCTGTGTCGAAAAAGCTAATAGAGCATGTCCGCATTAGGCATGACTGGGGTGCCATGTATATCGCATTAAAGGGGGAGGATGAAGAATTTTATGTAGACATAAAGGAATATGAAATGCTTTTTGAAGATTTGGGGGGATTTGATGGGCTGTATATGAAAATGCTTGCCTGTGGTATTCCAACAGCAGTTCATCTGATGTGGATTCCTTTCTCAGAATTGAATATCCGCCAACAGTTTCAATTGATATTAAGAGTGTCTCATGGGATTTTGAGTGGCTTGTGGAATTCTGGAGTTGTCATGAATGCAAGAAATTGGATCTTTAAGAATATTAAGGATACAACTGATGACATAATGGTGGTGATAGTGTTTCCTATTGTGGAATTTTTAGTCCCTTACCCGGTGAGGATACAATTGGGGATGGCTTGGCCAGAGGAAATATATCAGACAGTTGACTCCACATGGTACTTGAAATGGCAATCAGAGGCAGAATTGAATTTTAGATCAAGACAAACAACAACAGATGATGATGATGAAGAAGTTCCATGGTTTTTTTGGTTTTTGGTCAGAGCTGCTATATATGGGTTTGTTTTGTTTCATGTGTTGAAATTTACAAGGAGAAGACTTCCTAGTCTTCTTGGGTTTGGGCCTTTGCGAAGAGATCCAAATAGGCAGAAGTTGCGGCGAGTGAAGTATTACATTACTCAAAAATTGAAAAAAATCAAGCAGAGGAGAAAGGATGGTGTTGATCCCATAAAGACCGCTTTTGAACAGATGAAGAGGGTGAAGAAACCACCAATACCATTGAAAAACTTTGCTAGCATTGAGTCTATGAAAGAGGAAATCAATGAAGTTGTGGCATTTTTGCAAAATCCAAGGGCATTTCAAGAAATGGGTGCGCAGGCACCTCGGGGTGTTCTTATTGTAGGCGAGAGGGGTACAGGTAAGACATCTCTAGCATTGGCTATAGCTGCTGAGGCTAAGGTGCCCGTTGTTGAAATTAAGGCCCAACAATTGGAGGCTGGGCTGTGGGTTGGACAAAGTGCCTCCAATGTTCGTGAATTGTTTCAGACAGCAAGAGATCTGGCTCCTGTGATAATATTTGTGGAGGATTTTGACCTGTTTGCTGGTGTACGCGGTACATATATTCATACCAAAAATCAAGACCATGAAACTTTCATCAATCAACTGCTTGTGGAACTTGATGGATTTGAGAAACAAGATGGGGTTGTTTTGATGGCTACTACTAGAAATCTCAAGCAAATTGATGAGGCCTTGCAGAGGCCAGGTCGCATGGATAGAATATTTCATCTTCAAAGACCGACACAAGCTGAGAGAGAAAAAATATTGTACTTGTCAGCAAAGGAAACCATGGATGATCAGCTTATTGATTATGTTGACTGGAAAAAGGTTGCTGAGAAGACAGCCCTTTTACGACCTATCGAATTAAAAATTGTTCCAATGGCTTTGGAAGGAAGTGCCTTCCGGAGCAAAGTACTGGACACAGATGAATTGATGGACTACTGTGGTTTCTTTGCGACTTTCAGTTCTATGATTCCACCATGGCTGCGGAAGACCAAAATTTTCAATAAGTTTAGCAAAGCATTGGTGAATCATCTTGGACTGGCATTGACAAAAGAAGATTTGCAGAATGTTGTTGATTTGATGGAACCATATGGCCAAATAAGCAATGGGATAGAGCTTTTGAGCCCTCCACTTGATTGGACGAGGGAAACCAAGTTTCCACATGCTGTCTGGGCAGCTGGTCGTGGTCTTACTACTCTTTTATTACCAAATTTTGATGTTGTTGATAATCTTTGGCTTGAACCTCTATCCTGGCAGGGAATTGGATGTACAAAAATCACAAAAGCAAGAAATGAAGGTTCCATCAATGCGAATTCAGAATCAAGATCATATCTTGAAAAGAAGCTTGTGTTTTGTTTTGGTTCTTATGTTGCATCCCAAATGTTACTTCCTTTTGGGGAAGAAAACTTACTTTCTACATCTGAGATACAGCAGGCGCAAGAGATAGCTACACGAATGGTCATTCAGTATGGGTGGGGACCTGATGACAGTCCTGCAATATATTACCGTAGTAATGCGGTTACGGCATTAAGCATGGGGGATGACCATGAATATGTGATGGCAGCTAAAGTTGAAAAGATGTTCGATTTGGCATATCTCAAAGCAAGAGAAATGCTGCAGAAAAATCGCCTAGTACTAGAAAAGATTGTGGAGGAATTACTCGAGTTTGAAATTTTGACTGGAAAGGATTTAGAAAGAATTACTAAAGACAACGGTGTAATCAGGGAGCAAGAGCCGTTTACTCTCGGTGAAGTTCAAGCTAGTGAGCCAACATCTGGCAGCTTCCTTGAAAGAGGAAATGCATCAGGAAGTGCTCTACTAGCATCCTAG 3852 0.4359 MASSPLHSPLHFSQRPLFTSIRPIPNRTFISNSRRTPRTPLSLAPITLTPPIITFAAKSTPTPSPNDDVLLKHIVRALFCFAVGFSALDAFRAPPPAFAIAAPWSLLVKRGTEEKEKVKSHEYSDCTDRLLETVSFLLKTVDEVRRGNGDVSEVEAALEAVKSKKEELRKEINGRLYPALKKLRRERKALWKRSGEIVGEILKAMGEYDKLKANEKEKARMKELEESVGVMEDEYNGVWERVGEIEDAISREETVALSYGVREINFIERECEQLVERFKREMEIKNKDFKSLPTGSVTRLSKSVIQKDLETVHRKQAEQIILPSILDVEDLGPFFHEDSINFAQRLTRSLKDSREKQRNLEAQIRKKMKKFGKEKRSIIYSPDEEVVRGFPEVELKWMFGNKEVVLPKAVGLHLYHGWKKWREEAKANLKQNLIKDAEFGRQYVAERQERILLDRDRVVSRTWYNEEKNRWEIDPVAVPYAVSKKLIEHVRIRHDWGAMYIALKGEDEEFYVDIKEYEMLFEDLGGFDGLYMKMLACGIPTAVHLMWIPFSELNIRQQFQLILRVSHGILSGLWNSGVVMNARNWIFKNIKDTTDDIMVVIVFPIVEFLVPYPVRIQLGMAWPEEIYQTVDSTWYLKWQSEAELNFRSRQTTTDDDDEEVPWFFWFLVRAAIYGFVLFHVLKFTRRRLPSLLGFGPLRRDPNRQKLRRVKYYITQKLKKIKQRRKDGVDPIKTAFEQMKRVKKPPIPLKNFASIESMKEEINEVVAFLQNPRAFQEMGAQAPRGVLIVGERGTGKTSLALAIAAEAKVPVVEIKAQQLEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGTYIHTKNQDHETFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAEREKILYLSAKETMDDQLIDYVDWKKVAEKTALLRPIELKIVPMALEGSAFRSKVLDTDELMDYCGFFATFSSMIPPWLRKTKIFNKFSKALVNHLGLALTKEDLQNVVDLMEPYGQISNGIELLSPPLDWTRETKFPHAVWAAGRGLTTLLLPNFDVVDNLWLEPLSWQGIGCTKITKARNEGSINANSESRSYLEKKLVFCFGSYVASQMLLPFGEENLLSTSEIQQAQEIATRMVIQYGWGPDDSPAIYYRSNAVTALSMGDDHEYVMAAKVEKMFDLAYLKAREMLQKNRLVLEKIVEELLEFEILTGKDLERITKDNGVIREQEPFTLGEVQASEPTSGSFLERGNASGSALLAS 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01848 1283 Pfam ATPase family associated with various cellular activities (AAA) 785 918 IPR003959 GO:0005524|GO:0016887
Pumo3g01848 1283 Coils Coil 214 234 - -
Pumo3g01848 1283 Gene3D - 727 938 IPR027417 -
Pumo3g01848 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 953 IPR027417 -
Pumo3g01848 1283 FunFam ATP-dependent zinc metalloprotease FtsH 3 727 938 - -
Pumo3g01848 1283 Coils Coil 151 171 - -
Pumo3g01848 1283 SUPERFAMILY FtsH protease domain-like 1055 1252 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pumo3g01848 1283 SMART AAA_5 781 921 IPR003593 GO:0016887
Pumo3g01848 1283 Gene3D Peptidase M41 1053 1251 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pumo3g01848 1283 Pfam Peptidase family M41 1113 1241 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pumo3g01848 1283 Coils Coil 343 370 - -
Pumo3g01848 1283 PANTHER METALLOPROTEASE M41 FTSH 348 1248 - -
Pumo3g01848 1283 FunFam ATP-dependent zinc metalloprotease FtsH 3 1053 1250 - -
Pumo3g01848 1283 MobiDBLite consensus disorder prediction 1260 1283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01848 Pumo-Chr3 29521663 29538924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01848 746 954 Miscellaneous Gene Families AT3G47060 41.038 1.27e-38 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01848 - - gmx:100794385 2398.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01848 3 29521663 29538924 Pumo3g01848 3 29521663 29538924 ECH