Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01230 ATGATGAGGGAGTTTCCCAATGTCGGCAACGATTTGAAGCAGCTTTTGCAAATGATTGATGATGGACAAGCTGTTGACATAAAGGGTATATCAGAGAGATCTTTAACGAAGCATTTGAAAAAGCTGTTCCTTTCCTTAAAACTTAAGGAAAATGGAGATAGGGTTTTTTTACTGCCTTCTAAAGCTCGCCCTACTTTGGATTTTGTTGGCCCTCTCATTCACTCCTATATGAATCCCATCAATGAGAAAGCTGATGCTTCTGCACCGGTGCCTGAATCAAGTTCAGTTCCAATAGATAATGGAAATGAACAGATGGTGGATGACCATGTAACGGCTGCACCAGAGGATCATTCCGTTGGTCCTAGAAAAAGGATGATTGGCCCTGCAATGCCATCAGCTGAATTACTTGCTGCTGCTGCCAAGTTAACAGAGGCACAGACTGAGCTACGAGAAGTCGAATTGGACGACGATACTGAACTATTTGTAGGACCTCCACCACCAGCTATAGTTTCTGAAGCAGAATCAGCTAATGAAGCAGAACGTTTTGAAGAGGTAACCAGGATCATGGAAGTTGAGGCAGACAGCCCATATGATGTTCTAGGAGTTAACCATAATATGTCCAGTGACAACATAAAGAAAAAGTACTGGAAGATGTCACTATTGGTTCATCCTGATAAATGCTCTCATCCACAAGCCCACCAGGCTTTTATTAAGTTAAATAAAGCTTTCAAAGAGTTACAAGATCCAGAAAAGCGGAAAGCAATGGATGAAAAAATAAAACTCAAGCAAGAACAAGAGCAATTTCAGGCTGAACTTAAAACCATGCGTGAGGCTGCACTGTGGAGAAGATCTCAAGGTATTTCCATGGAGGGTGATGAAGAGCTTCTGGCACAAACAGAGGTTAAAGTGGAACCAAAAAGGGATGAGTGGATGACAACACTGCCTCCGGAAAGGAAACCTGGTGGTATGACTATGCAATCAACCAAGTTTAGCCGGGGGCCAAAGGAAGGTAGAGGTGATACTAGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAGAAAGCAAAGATGAATTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGACGAAAAGAAAAGGGCCAGTGCGGATGCAGAATTGGTGGACAAATACAATAAAGCAAAACGGTCAAAAACATTGGTGCAAAAGCATCAAGAAGAGGTTGCTAGCAAATCCAAGAAAAAGTCCAAGCAACAGTCCAAACAACAGCCCGAGAATGAAGACTGGGTGGGTCAACACCCGTGGAAGCCATGGGACCGTGAAAAGGATCTGACAGCTGGAAGGAAAACTGTAAATTTTGATTCAGAAAGCATGACTAAGGGCTTATCTTCAAGGTTTTCTTCTGGAAATTTTCAGAGGAACTTCCTTTGA 1425 0.4295 MMREFPNVGNDLKQLLQMIDDGQAVDIKGISERSLTKHLKKLFLSLKLKENGDRVFLLPSKARPTLDFVGPLIHSYMNPINEKADASAPVPESSSVPIDNGNEQMVDDHVTAAPEDHSVGPRKRMIGPAMPSAELLAAAAKLTEAQTELREVELDDDTELFVGPPPPAIVSEAESANEAERFEEVTRIMEVEADSPYDVLGVNHNMSSDNIKKKYWKMSLLVHPDKCSHPQAHQAFIKLNKAFKELQDPEKRKAMDEKIKLKQEQEQFQAELKTMREAALWRRSQGISMEGDEELLAQTEVKVEPKRDEWMTTLPPERKPGGMTMQSTKFSRGPKEGRGDTSVWTDTPSDRAQKAKMNYLEAYNEATALASNEDEKKRASADAELVDKYNKAKRSKTLVQKHQEEVASKSKKKSKQQSKQQPENEDWVGQHPWKPWDREKDLTAGRKTVNFDSESMTKGLSSRFSSGNFQRNFL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01230 474 CDD DnaJ 196 248 IPR001623 -
Pumo3g01230 474 MobiDBLite consensus disorder prediction 311 352 - -
Pumo3g01230 474 MobiDBLite consensus disorder prediction 370 474 - -
Pumo3g01230 474 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 474 - -
Pumo3g01230 474 MobiDBLite consensus disorder prediction 370 420 - -
Pumo3g01230 474 SUPERFAMILY Chaperone J-domain 169 253 IPR036869 -
Pumo3g01230 474 ProSiteProfiles dnaJ domain profile. 195 259 IPR001623 -
Pumo3g01230 474 MobiDBLite consensus disorder prediction 448 474 - -
Pumo3g01230 474 Pfam Protein of unknown function (DUF3752) 315 465 IPR022226 -
Pumo3g01230 474 Coils Coil 135 155 - -
Pumo3g01230 474 Coils Coil 251 278 - -
Pumo3g01230 474 Gene3D DnaJ domain 177 280 IPR036869 -
Pumo3g01230 474 MobiDBLite consensus disorder prediction 430 447 - -
Pumo3g01230 474 Pfam DnaJ domain 196 256 IPR001623 -
Pumo3g01230 474 PRINTS DnaJ domain signature 215 230 IPR001623 -
Pumo3g01230 474 PRINTS DnaJ domain signature 231 251 IPR001623 -
Pumo3g01230 474 PRINTS DnaJ domain signature 197 215 IPR001623 -
Pumo3g01230 474 SMART dnaj_3 194 251 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01230 Pumo-Chr3 19888180 19895054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01230 161 269 Miscellaneous Gene Families AT5G49580 29.464 2.62e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01230 - - gmx:100788598 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01230 3 19888180 19895054 Pumo3g01230 3 19888180 19895054 ECH