Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01011 ATGGGGGTGCACAACTTATTGTGCCACCTGGGAAATGGCTTACGGGATCGTTTAATCTCACAAGCCATTTCACTCTTTTTCTCCGACAAGGATGCTGTTATTCTTGCATCTCAGGTCATTGGTGTGATCTCTTTAGTTCTGATATTGGGATCACTAAATGTGAAGGTAGCAGAATGCAGGGGTGCCAATGGGATGTACTATGCCATAAATTGCCGAAAGCATAGTGCAGTTTTGACAGATTTTGGTGGGGTTGGTGATGGCGTGACATCCAACACCAGGGCCTTTCGATCTGCAATAAGCACACTCAGCCAATATGCATCTGATGGAGGTGCACAACTTATTGTGCCACCCGGGAAATGGCTAACGGGACCTTTTAATCTCACAAACCATTTCACTCTTTTTCTCGACAGCAATGCTGTTGTTCTTGCATCTCAGGTATAG 441 0.4535 MGVHNLLCHLGNGLRDRLISQAISLFFSDKDAVILASQVIGVISLVLILGSLNVKVAECRGANGMYYAINCRKHSAVLTDFGGVGDGVTSNTRAFRSAISTLSQYASDGGAQLIVPPGKWLTGPFNLTNHFTLFLDSNAVVLASQV 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01011 146 Gene3D - 71 146 IPR012334 -
Pumo3g01011 146 PANTHER PECTIN LYASE-RELATED 47 145 - -
Pumo3g01011 146 SUPERFAMILY Pectin lyase-like 78 144 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01011 Pumo-Chr3 15603047 15607785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01011 66 145 Glycoside Hydrolase AT3G48950 75.000 5.11e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01011 - - gmx:100795453 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01011 3 15603047 15607785 Pumo3g01011 3 15603047 15607785 ECH