Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00936 ATGAATTCAATAACCCTTTTAGGTCCAAAAATGGTCCAAAAGTTTTCCCATTCTTTGATTATTTTGCGGAGACTATGTAGCCATCCGTTTGATGGTGATGGCTTTGAATTTATTGAGGAGCCTTTGAAAAAACTAGGTTCAGATTATGATTCCACTGTGGATGAAAGGCTCCATTTGAACGAGGATTGGGGCTTTAAGCAAAAGCAATTTTCACTTAGAAAAGGGTTTTTAGAAAATGTTAAGTTAGATGCTAAGAGGGTCCTTGAGGTTCTCCGGCAAGACGGTCCCGGTCTCGATGCGAGGTCGATTTTAGGTGAGTTGCATGTAAGGCCATCGGGGCTTCTTGTGAGGGAGGTTCTCTTTGGAATTTTGAAGAATATAAATTGTGAGAATAAGACCAGGTGTGCAAAGCTGGCATATAAGTTTTTTGTGTGGTGTGGTCAGCAAGAGGGTTACCGGCACACTGCGAATGCATATCACTTAGTTATGAACATATATGCTGAGTGTGAGGAGTTTAAGGCGTTGTGGAGGTTGGTTGATGAGATGATTGATAAAGGGCTTCCGGCTACTGCCCGAACTTTCAATATCTTGATTCGTACTTGTGGTGAGGCGGGATTGGCTAAGAAATTGGTGGAGAGATTTATAAAATCTAAGACGTTTAACTTTAGGCCTTTTAAGCACTCCTACAATGCAATCCTGCACGGTCTTCTTGTTTTAAACCAGTACAAGTTGATTGAGTGGGTTTATCAACAGATGTTACTTGATGGATTTTCTTCAGATATTTTAACTTATAATATTGTCATGTATGCCAAGTACAGACTTGGAAAGTTGGATCAGTTTCACAGACTGCTTGATGAGATGGGTAGAAATGGATTTTCTCCAGATTTTCATACCTTTAATATTCTTCTTCATGTTCTTGGCAAAGGGGACAAACCACTCGCAGCTCTCAATCTTTTAAGTCACATGAGAGAAATGGGTATAGATCCAACTGTGCTTCATTTCACTACATTGATAGATGGACTCAGCAGAGCTGGGAATCTGGATGCTTGCAAATATTTTTTTGATGAAATGATAAAGAATGGATGTATGCCAGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCTGGTGAGATTGAGAAAGCACTGGAAATGTATCAAGATATGATTTCTAGAGAACAAATTCCAAATGTTTTTACATACAATTCCATAATTCGGGGATTATGTATGGCTGGAAAATTTGATGAAGCGTGCTCAATGCTCAAGGAAATGGAGACCAAAGGTTGTAGTCCAAATTCTGTTGTCTATAATACATTAGCAAGTTGTTTGAGGAATGCTGGAAAGACTGCTGATGCTCATGAAGTGATAAGACAGATGGCGGAGAAGGGGAAGTATGCCCACATACATTCAAGATTCAAAGGGCATAAGGCTTAG 1443 0.3971 MNSITLLGPKMVQKFSHSLIILRRLCSHPFDGDGFEFIEEPLKKLGSDYDSTVDERLHLNEDWGFKQKQFSLRKGFLENVKLDAKRVLEVLRQDGPGLDARSILGELHVRPSGLLVREVLFGILKNINCENKTRCAKLAYKFFVWCGQQEGYRHTANAYHLVMNIYAECEEFKALWRLVDEMIDKGLPATARTFNILIRTCGEAGLAKKLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLDGFSSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLSHMREMGIDPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCMPDVVAYTVMITGYVVAGEIEKALEMYQDMISREQIPNVFTYNSIIRGLCMAGKFDEACSMLKEMETKGCSPNSVVYNTLASCLRNAGKTADAHEVIRQMAEKGKYAHIHSRFKGHKA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00936 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 86 303 - -
Pumo3g00936 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Pumo3g00936 480 Pfam PPR repeat 228 257 IPR002885 -
Pumo3g00936 480 Gene3D Tetratricopeptide repeat domain 244 327 IPR011990 GO:0005515
Pumo3g00936 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Pumo3g00936 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Pumo3g00936 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Pumo3g00936 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Pumo3g00936 480 Gene3D Tetratricopeptide repeat domain 115 240 IPR011990 GO:0005515
Pumo3g00936 480 Pfam PPR repeat family 260 306 IPR002885 -
Pumo3g00936 480 Pfam PPR repeat family 364 412 IPR002885 -
Pumo3g00936 480 Pfam PPR repeat 325 357 IPR002885 -
Pumo3g00936 480 Pfam PPR repeat 430 462 IPR002885 -
Pumo3g00936 480 SUPERFAMILY TPR-like 365 465 IPR011990 GO:0005515
Pumo3g00936 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Pumo3g00936 480 NCBIfam pentatricopeptide repeat 367 400 IPR002885 -
Pumo3g00936 480 NCBIfam pentatricopeptide repeat 297 330 IPR002885 -
Pumo3g00936 480 NCBIfam pentatricopeptide repeat 334 366 IPR002885 -
Pumo3g00936 480 NCBIfam pentatricopeptide repeat 263 295 IPR002885 -
Pumo3g00936 480 NCBIfam pentatricopeptide repeat 402 436 IPR002885 -
Pumo3g00936 480 NCBIfam pentatricopeptide repeat 437 466 IPR002885 -
Pumo3g00936 480 Gene3D Tetratricopeptide repeat domain 346 480 IPR011990 GO:0005515
Pumo3g00936 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00936 177 473 Glycosyltransferase AT1G05670 28.477 3.08e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00936 - - gmx:100792512 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00936 3 14428336 14432062 Pumo3g00936 3 14428336 14432062 ECH