Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00929 ATGGTTAAGGTAACTATAGTTGGAAGGGTAAGCGATGGATTGCCTCTAGCACAAGGACTGAGATATATGAATGAAGAGAATGGATATCTTTCAAGTTACAGGGAACAAGCAGAGTTCATACTCCAAGAAATTTCAAGCGGAGCATTAACAGCTTCCAAGATGACTATTCATATTGATCATTTCTGCTTCAACTACTTGGTCGAGAACGGAGTTGTTTTCATAGTCTTGTGTGAGTCCACGTACCCAAGAAAACTGGCCTTCCATTACCTACAAGATATACAAAAGGAGTTTGAGAAGTTTGATAAAACCCTCATAAGCAAAATCACAAGGCCATACAGCTTTGTCAAATTTGATGGTATAATTGCAAACTTTAGCAGACAGTACATTGATACAAGAACTCAGGCCAACCTATCAAAACTTAATGCTAACCGGAAGCAAGATTTAGATATTGTCACTGAAGACATTTACAACATTTTAGAAAGGAAGAGAAATTTAGAAACAATGAGAAGGCTACAGGTTACTCCTCAACCTGAATCCACAATATGGTGTTCCCCACGTCTTGAGATGATTGCATTGAAATGGACACCTATTATTATCATTGTCATTACTTCGATGGCTCTTCTATGGGCTAGCTTAGCCCTCACAGATGACTTTATTGTTTCAAGCTGGTGA 672 0.3839 MVKVTIVGRVSDGLPLAQGLRYMNEENGYLSSYREQAEFILQEISSGALTASKMTIHIDHFCFNYLVENGVVFIVLCESTYPRKLAFHYLQDIQKEFEKFDKTLISKITRPYSFVKFDGIIANFSRQYIDTRTQANLSKLNANRKQDLDIVTEDIYNILERKRNLETMRRLQVTPQPESTIWCSPRLEMIALKWTPIIIIVITSMALLWASLALTDDFIVSSW 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00929 223 CDD Longin 5 128 IPR010908 -
Pumo3g00929 223 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Pumo3g00929 223 Gene3D Longin domain 1 159 - -
Pumo3g00929 223 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Pumo3g00929 223 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
Pumo3g00929 223 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 211 IPR044565 GO:0005484|GO:0006888|GO:0006890
Pumo3g00929 223 SMART Longin_2 36 120 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00929 Pumo-Chr3 14370288 14372150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00929 16 168 Miscellaneous Gene Families AT3G54300 23.563 3.86e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00929 K08517 - gmx:100781527 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00929 3 14370288 14372150 Pumo3g00929 3 14370288 14372150 ECH