Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00926 ATGGGAAAGCAAAAGCAACAAGTCATTTCCCGCTTCTTCGCTCCCAAACCCAAATCTCTTCCGTCATCAACCACCCATTCCCCTCCTCGTCCCAACCCTCCCACTCCCAAAATCTCCGCCACCGTCACTTTCTCCCCCTCCAAACGCCGCCTAACCTCCAACCTCACCCCCCCTCGCAAACACCCCAAACTCTCCCTCGTCCCCCCTTCTCTCCACCAACGCTTCCTCCACAAGCTTCTCGAACCTTCCACCCCGCAACAACACCACCCCCCTCCTCCCTCTTCCAAACCCCCAACCTACACCCCCCTCGAACAACAAGTCCTGGACCTCAAAGCCAAACACCCCGACGTCCTCCTCATGGTCGAGGTCGGTTATAAGTACCGTTTCTTCGGCCAGGACGCCGAACACGCCGCCAGAGTCCTCGGCATTTACGCCCACATGGACCACAACTTCTTAACCGCCAGCATACCAACTTTTCGACTAAATGTCCACGTCAGGAGGCTCGTCGGCGCCGGCTACAAGGTCGGCGTCATCAAGCAGACCGAGACCGCCGCCATCAAGGCCCACGGCTCCAACCGCGCCGCTCCCTTCGAGCGGGGGCTGTCCGCGCTCTACACCAAGGCCACGCTCGAGGCCGCGCCGGACTTGGGCGGAGCGGAGGAGGGGTGCGGCGGAGAGAGCAATTACTTGCTGTGTGTGGTGGAGAAGGGGGTGGAGAGTGGTGTTGATGTGAGGGCTGGGATTGTTGCTGTGGAGATTTCGACCGGGGATGTTGTTTATGGGGAGTTTAGTGATGGTTTTCTGAGGAGTGCTCTTGAGGCTGTTCTTGTCAACTTGTCTCCGGCTGAGTTGCTTCTTGGGGACCCTCTTTCGAAGCAAACAGAGAAGTTATTGCTGGATTTTGCTGGACCTGCCTCAAATGTTTGTGTGGAGCGTGTTTCACGAGATTGTTTTATTGATGGGGGTGCTCTTGCTGAAGTTATGACCTTGTATGAGACCATGCATGTAGACAGTCCATCAGATTCAATGCAAAGCAATGATTCGACTGTGAACAGAAATCAGCAGTTAATAATCAAGGAGGTGATGAACATGCCAGATTTGGCTGTCCAAGCTTTGGCCTTAACTATTCGCCATTTAAAGGAATTTGGTTTTGAAAGAATTCTGTGTTCAGGAGCTTCTATAAGGCCCTTCTCAAGCAATACGGAAATGACTCTCTCAGCCAATGCACTTCAACAACTGGAGGTTTTAAAAAATAACAGTGATGGATCTGAGATTGGTTCCTTGCTGCAAATTATGAATCGTACTCTTACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTATCTCACCCATTGTGTGATCAAACCTTAATTTCTGCTCGTCTTCATGCTGTATCTGAAATTGCAGAGTCTATGGGATCTTATAATAGTATGAAGAATCTTGTATGTGTTGAGGAAGATCCTGATGTAGCAATCGTGCAACCTGAGTTAGCATACATACTTTCACTGGTTTTGACAACTCTTGGCCGAGCACCTGATATACAACGTGGAATTACTAGAATCTTCCATTGCACTGCTACCCCATCTGAGTTCGTTGCAGTAATTCAAGCTATTTTGTCTGCTGGAAAACAGCTTCAACAACTTAACATAGGAGAGGGGAGTAATAACACATTGCGCTCTAATCTATTAAAAAAGTTAATTTTGACTGCTTCCTCTGACAGTGTTATTGGTAATGCTGCAAAAATGTTGTCATCTTTAAACATAGACTCTGCTGATCAAGGAGATCTAACAAAATTGATCATTGCATCGGAGGGACAATTTCCAGAGGTCATTAGAGCTCGGAAGGCTTTCAAGCTGGCAGTGGAACAATTAGATTCGTTGATTGACTTCTATCGCAAACGGCTTGGAATGAAAAATTTGGAATTCATTAGTATTTCTGGAACAACTCATTTGATTGAGTTATCAACTGATGTAAAGGTTCCTTCAAACTGGGTCAAGGTAAATAGCACCAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGACAAATTATCATTAGCAAAAGAGGAGCTCACTATTGCCTGCCGAGCTGCCTGGAATAGCTTTCTTAGGGACTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTTCGCCCAGTTTTTGTAGATGATCACGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACTACCTTACAAGACAATTTTGTCCCAAATGATACATACATGCATGCAGATGGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGGGGGAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTTCATGTCCTGGATAGGATCTACACCCGGATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAATTAAGTGAGACTTCACATATACTCCATAGCTGCACAGAACATTCACTGGTTATCATAGATGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCATTGCTCATGCCACATTGCATTATCTTCTGAAGCAAAAAAGAAGCATGGTCCTCTTTGTTACTCACTATCCCAAGATTGCCAGCCTGGCAACTGAATTTCCTGGCTCTGTGGCAGCATATCATGTGTCACATCTGACCTCACATGATGCAAGTAAAAATTCCAATTTGGATCATGATGTCACTTATCTATACAAGCTCGTACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTTGCCCAGCTTGCACAGTTACCATCAAATTGCATCAGTCGAGCCATTTTCATGGCTTCTAAATTAGAAGCACTAGTAAACAGTAGAATACATAGTAGATCGAGAAAGGAGCTATTATTGGATACGCTGGTGATTGGTCAAGAGCAAGAACAGCTTATGGCTCAACCACATGACCATCCACATCAAGAGTTTGGTATAGCTTACAAAGATTTCTATTTAAACTTAAAAGCTGCAATACAAGATGGTGACTGTGCAAAAAACTTTCACCTATTGGAACATGCTAATGCTAGAAGCATTGCAAAGAAATTAATTGTCAGGTGA 3210 0.4573 MGKQKQQVISRFFAPKPKSLPSSTTHSPPRPNPPTPKISATVTFSPSKRRLTSNLTPPRKHPKLSLVPPSLHQRFLHKLLEPSTPQQHHPPPPSSKPPTYTPLEQQVLDLKAKHPDVLLMVEVGYKYRFFGQDAEHAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVGAGYKVGVIKQTETAAIKAHGSNRAAPFERGLSALYTKATLEAAPDLGGAEEGCGGESNYLLCVVEKGVESGVDVRAGIVAVEISTGDVVYGEFSDGFLRSALEAVLVNLSPAELLLGDPLSKQTEKLLLDFAGPASNVCVERVSRDCFIDGGALAEVMTLYETMHVDSPSDSMQSNDSTVNRNQQLIIKEVMNMPDLAVQALALTIRHLKEFGFERILCSGASIRPFSSNTEMTLSANALQQLEVLKNNSDGSEIGSLLQIMNRTLTIFGSRLLRHWVSHPLCDQTLISARLHAVSEIAESMGSYNSMKNLVCVEEDPDVAIVQPELAYILSLVLTTLGRAPDIQRGITRIFHCTATPSEFVAVIQAILSAGKQLQQLNIGEGSNNTLRSNLLKKLILTASSDSVIGNAAKMLSSLNIDSADQGDLTKLIIASEGQFPEVIRARKAFKLAVEQLDSLIDFYRKRLGMKNLEFISISGTTHLIELSTDVKVPSNWVKVNSTKKTIRYHPPEVVTALDKLSLAKEELTIACRAAWNSFLRDFSKHYAEFQAAVQALAALDCLHSLAILSRNKGYVRPVFVDDHEPVQIQICSGRHPVLETTLQDNFVPNDTYMHADGEYCQIVTGPNMGGKSCYVRQVALIAIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQQGRSTFLEELSETSHILHSCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKQKRSMVLFVTHYPKIASLATEFPGSVAAYHVSHLTSHDASKNSNLDHDVTYLYKLVPGVSERSFGFKVAQLAQLPSNCISRAIFMASKLEALVNSRIHSRSRKELLLDTLVIGQEQEQLMAQPHDHPHQEFGIAYKDFYLNLKAAIQDGDCAKNFHLLEHANARSIAKKLIVR 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00926 1069 MobiDBLite consensus disorder prediction 37 53 - -
Pumo3g00926 1069 FunFam DNA mismatch repair protein MSH3 742 1014 - -
Pumo3g00926 1069 PIRSF Msh6 91 1025 IPR017261 GO:0006298|GO:0030983
Pumo3g00926 1069 SMART mutATP5 786 983 IPR000432 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 SUPERFAMILY DNA repair protein MutS, domain III 407 739 IPR036187 -
Pumo3g00926 1069 Gene3D - 405 734 - -
Pumo3g00926 1069 MobiDBLite consensus disorder prediction 22 36 - -
Pumo3g00926 1069 ProSitePatterns DNA mismatch repair proteins mutS family signature. 867 883 IPR000432 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 Pfam MutS domain V 789 986 IPR000432 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 FunFam DNA mismatch repair protein 224 400 - -
Pumo3g00926 1069 SUPERFAMILY DNA repair protein MutS, domain I 92 209 IPR016151 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 104 1002 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Pumo3g00926 1069 FunFam DNA mismatch repair protein 91 221 - -
Pumo3g00926 1069 Pfam MutS domain III 408 734 IPR007696 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 Pfam MutS domain I 101 211 IPR007695 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 Gene3D MutS, connector domain 224 402 IPR036678 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 SUPERFAMILY DNA repair protein MutS, domain II 225 296 IPR036678 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 MobiDBLite consensus disorder prediction 85 99 - -
Pumo3g00926 1069 FunFam DNA mismatch repair protein Msh3 584 710 - -
Pumo3g00926 1069 MobiDBLite consensus disorder prediction 1 66 - -
Pumo3g00926 1069 Pfam MutS domain II 228 313 IPR007860 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 MobiDBLite consensus disorder prediction 82 101 - -
Pumo3g00926 1069 Pfam MutS family domain IV 613 693 IPR007861 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 Gene3D DNA repair protein MutS, domain I 93 216 IPR016151 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 986 IPR027417 -
Pumo3g00926 1069 Gene3D - 742 1018 IPR027417 -
Pumo3g00926 1069 SMART DNAend 423 769 IPR007696 GO:0005524|GO:0006298|GO:0030983
Pumo3g00926 1069 Gene3D - 584 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00926 Pumo-Chr3 14344274 14353032 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00926 K08736 - gmx:100789883 1851.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00926 3 14344274 14353032 Pumo3g00926 3 14344274 14353032 ECH