Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00904 ATGGCCGACGAGGACTATGATGATATGGACATGGGGTACGAGGATGAGCCACCAGAGCCTGAGATTGAGGTACTGAATTCTCTGTCTCGTTTCCTTTCTTTGTGTTTGCTCAAATACATGTTATGGAACTTTGCGTTGAATGAATTAATGGAATTATTGGTTGGTGGATTGATTGATGGGCAGGAAGCAGAGGAGGATGTTGAAAACAACAAAAACGATGACGTAACTGGAGAGCCTATTGACACTGAGGATAAGGAAGAGGAACAACCAGTGGAGCGGCCTCGAAAGACATCTAAATATATGACCAAGTATGAGCGTGCTAGGATTTTGGGTACTCGTGCTCTTCAAATCAGTATGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCGCTCGAGATTGCCATGAAGGAGCTTCGAGAGAGGAAAATACCCTTTACAATTCGGCGCTATTTACCTGATGGAAGCTATGAAGATTGGGGGGTTGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGA 543 0.4567 MADEDYDDMDMGYEDEPPEPEIEVLNSLSRFLSLCLLKYMLWNFALNELMELLVGGLIDGQEAEEDVENNKNDDVTGEPIDTEDKEEEQPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00904 180 MobiDBLite consensus disorder prediction 64 98 - -
Pumo3g00904 180 Pfam RNA polymerase Rpb6 97 148 IPR006110 GO:0003677|GO:0003899|GO:0006351
Pumo3g00904 180 Gene3D - 57 171 IPR036161 GO:0003677|GO:0003899|GO:0006351
Pumo3g00904 180 PIRSF RpoK/RPB6 51 171 IPR006111 GO:0003677|GO:0003899|GO:0006351
Pumo3g00904 180 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 102 116 IPR020708 GO:0003677|GO:0003899|GO:0006351
Pumo3g00904 180 SMART RNA_pol_Rpb6_2 95 148 IPR006110 GO:0003677|GO:0003899|GO:0006351
Pumo3g00904 180 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 99 154 IPR006111 GO:0003677|GO:0003899|GO:0006351
Pumo3g00904 180 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K 1 170 - -
Pumo3g00904 180 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC2 48 171 - -
Pumo3g00904 180 PIRSF RPB6 54 171 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Pumo3g00904 180 PIRSF RPB6 1 27 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Pumo3g00904 180 SUPERFAMILY RPB6/omega subunit-like 66 170 IPR036161 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00904 Pumo-Chr3 14078580 14082201 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00904 K03014 - rcu:8258290 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00904 3 14078580 14082201 Pumo3g00904 3 14078580 14082201 ECH