Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00888 ATGGGTGGGGTGTTCGAGCAATTTATGTGGGCATTTCTTGTTGGGTGCACGTTCCTTTGTGTATTATCTCATCCTGATAAAGCTCCAAAGTACACATTTGTAAGAGAAGCAACTTCTGCTCCACCAATCTTAACTTATGACTATATAGTCATTGGTGGAGGAACATGTGGGTGTCCACTAGCAGCAACTCTCTCACAAGGTGCAAGAGTTTTAGTCCTTGAAAGGGGAGGCTCTCCTTACACAAACCCTGAGCAAATCAACATAAAGAACTTTGTGAATTCCCTTGCTGACATAAGCCCTTCATCATTTTCCCAGCCATTCATATCCAAAGATGGGGTCCTCAATTCCAGGGCTCGTGTCCTTGGTGGTGGCTCTGTCTTGAATGCAGGGTTCTATTCAAGGGCTAGCTCCAAGTACATAAGGGATTCTGGTTGGAATGAAACTTTGGCTAAGGACTCTTATAAATGGGTTGAAAAAAAGGTGGCCTTTGAGCCCCCTTTGCTGCAGTGGCAATCAGCAGTGAGGAATGGTTTGCTTGAAGTAGGTGTGTTGCCTTACAATGGTTTTACTTTTGATCACTTATATGGAACTAAGGTTGGAGGTACAATTTTTGATAAGGAGGGTAACAGGCACACTGCAGCTGATTTGTTAGAGTATGCTGATCCCAAGAGGATTTCTGTTTATCTCCATGCCACAGTGCAGAAGATACTATTTAAGTATAACACAGAAAAAAGAAGGCAACAAGCTTATGGAGTAATTTTCAAAGATGCATTGGGAGTCATGCATAGAGCATACTTAAGCACAAAAGCAAAGAATGAGATAATTTTATCAGCTGGTGCAATTGGAAGCCCACAGTTGCTGATGCTGAGTGGGATTGGTCCTGCTAACCATCTTGAGGCTCATGGAATCAAAGTGATTTTGGATCAGCCATTGGTGGGTCAAGGGATGGCAGATAATCCAATGAACGTTCTATTGGTTCCTTCCCCTGTGCCTGTTGAAGTCTCTCTGGTCCAAACAGTGGGCATCACTAAGTTTGGTAGCTTCATTGAAGCAGCCAGTGGATTGAGCTTGGGCCATTCTTGGTCTGAAAGGCTTCAAGGGATTTTTCAATTTGTGTCAAACCAGTCTGGCCAGCCTTCCACGTTTACCCCAGAAGCCAGGGAGAGTGTTGCAGACACCATTAGATCATTAGCCACAAATCCAACTCTCAAAGGAGGAGTCATACTTGAAAAGATCATAGGACCACGGTCCACGGGTCATTTGGAGCTCATAACCACAAACCCCAATGATAACCCATCAGTTACCTTTAACTATTTTCAAGACCCAGAGGACTTAAAGATATGTGTTGAAGGCATGAAAACCATCATAGATGTGATCAACTCAAAAGCATTCTCAAAGTTCCGCTACCACAACATGCCGGTCCAAGCTCTAATAGACTTGATGTTGCACTTACCCGTGAACTTGAGGCCTAAACATGCCAATGCTGCCTTCTCTTTAGAACAGTATTGCATAGACACTGTGCTAACAATTTGGCATTACCATGGGGGGTGCCAATCTGGTAAAGTTGTTGATCATAATTATAAGGTTATTGGGGTGGAAGCTCTAAGGGTAATTGATGGATCCACTTTTCGTCGCTCACCGGGTACAAATCCTCAAGCTACTGTAATGATGCTTGGAAGGTATATGGGAGAAAAGATTATAAAGAAAAGGTTCTTTCATGGACGGAAGTGA 1731 0.4339 MGGVFEQFMWAFLVGCTFLCVLSHPDKAPKYTFVREATSAPPILTYDYIVIGGGTCGCPLAATLSQGARVLVLERGGSPYTNPEQINIKNFVNSLADISPSSFSQPFISKDGVLNSRARVLGGGSVLNAGFYSRASSKYIRDSGWNETLAKDSYKWVEKKVAFEPPLLQWQSAVRNGLLEVGVLPYNGFTFDHLYGTKVGGTIFDKEGNRHTAADLLEYADPKRISVYLHATVQKILFKYNTEKRRQQAYGVIFKDALGVMHRAYLSTKAKNEIILSAGAIGSPQLLMLSGIGPANHLEAHGIKVILDQPLVGQGMADNPMNVLLVPSPVPVEVSLVQTVGITKFGSFIEAASGLSLGHSWSERLQGIFQFVSNQSGQPSTFTPEARESVADTIRSLATNPTLKGGVILEKIIGPRSTGHLELITTNPNDNPSVTFNYFQDPEDLKICVEGMKTIIDVINSKAFSKFRYHNMPVQALIDLMLHLPVNLRPKHANAAFSLEQYCIDTVLTIWHYHGGCQSGKVVDHNYKVIGVEALRVIDGSTFRRSPGTNPQATVMMLGRYMGEKIIKKRFFHGRK 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00888 576 Pfam GMC oxidoreductase 46 320 IPR000172 GO:0016614|GO:0050660
Pumo3g00888 576 SUPERFAMILY FAD-linked reductases, C-terminal domain 316 516 - -
Pumo3g00888 576 SUPERFAMILY FAD/NAD(P)-binding domain 44 570 IPR036188 -
Pumo3g00888 576 ProSitePatterns GMC oxidoreductases signature 2. 279 293 IPR000172 GO:0016614|GO:0050660
Pumo3g00888 576 Gene3D - 46 559 IPR036188 -
Pumo3g00888 576 Gene3D - 163 509 - -
Pumo3g00888 576 PANTHER OSJNBA0019K04.7 PROTEIN 9 570 - -
Pumo3g00888 576 Pfam GMC oxidoreductase 415 560 IPR007867 GO:0016614
Pumo3g00888 576 PIRSF Alcohol_oxidase 31 574 IPR012132 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00888 Pumo-Chr3 13791651 13794781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00888 7 575 Miscellaneous Gene Families AT5G51950 59.931 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00888 - - gmx:100780453 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00888 3 13791651 13794781 Pumo3g00888 3 13791651 13794781 ECH