Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00878 ATGGCCCAGTTTACCTCCTCAGGTAAATCCGACGATATCACAAAAGAAGACTGTAAGGGAAAAAGTGCACTCGTTGTTTGCTTTGGTGAAATTTTAATAGATTTTGTGCCAACAGTTGGTGGAGTGTCACTAGCTGAAGCACCTGCTTTCAAGAAAGCTCCTGGTGGTGCTCCTGCCAATGTGGCTGTTGGCATCTGTAGGCTTGGGGGTTCATCTGCTTTTATAGGCAAGGTTGGAGCAGATGAATTTGGGTATATGTTGGCTGATATTTTAAAGCAGAACAATGTTGAGACATCTGGCATAAAGTTTGACCCTAATGCAAGAACCGCGTTAGCTTTTGTTACACTTAGAGCTGATGGTGAGCGCGAGTTCTTGTTTTTCCGAAATCCTAGTGCTGATATGCTTCTTCAAGAGTCAGAGCTTGATATAAATCTCATAAAGAAGGCTAAAATTTTCCATTATGGTTCCATCAGCTTGATTGATGAGCCATGCAAGTCTGCTCATCTTGCTGCTATGAGAATTGCTAAAGAATCTGGTTGCATTCTTTCATATGATCCAAATTTGAGATTGGCACTATGGCCATCAGCTGAGGCTGCTCGGGATGGCATAAGGAGCATATGGGATCAAGCCGATGTCATAAAGATAAGTGAGGATGAGATTACATTTTTGACTGGTGGTGATGATCCTTATGATGATAATGTTGTATTAAAAAAGCTTTTTCACCCTAATCTCAAGCTTTTAATAGTTACTGAAGGGTCAGAAGGTTGTAGATATTACACCAAGGAATTTAAGGGCAGGGTTGCTGGTGTTAAAGTTAAACCCGTTGACACCACTGGTGCTGGTGATGCATTTGTTAGTGGGATTATCTATAGCTTAGCTTCTGATCAAAGTCTTTTCCAGGATGAGGAGCGTCTCCGAAAAGCTCTATATTTTGCCAATGTATGTGGTGCCATCACGGTAACAGAGAGAGGGGCAATTCCTGCATTACCTTACAAAAGAAGCTGTTGTGCAATTCGCTGCAACATAACATCAGCACTCACAGTTAGTTCTTTGGTCATCAGATGTAATATTTGTTTTTAA 1080 0.413 MAQFTSSGKSDDITKEDCKGKSALVVCFGEILIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGICRLGGSSAFIGKVGADEFGYMLADILKQNNVETSGIKFDPNARTALAFVTLRADGEREFLFFRNPSADMLLQESELDINLIKKAKIFHYGSISLIDEPCKSAHLAAMRIAKESGCILSYDPNLRLALWPSAEAARDGIRSIWDQADVIKISEDEITFLTGGDDPYDDNVVLKKLFHPNLKLLIVTEGSEGCRYYTKEFKGRVAGVKVKPVDTTGAGDAFVSGIIYSLASDQSLFQDEERLRKALYFANVCGAITVTERGAIPALPYKRSCCAIRCNITSALTVSSLVIRCNICF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00878 359 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 55 79 IPR002173 GO:0016301
Pumo3g00878 359 SUPERFAMILY Ribokinase-like 25 332 IPR029056 -
Pumo3g00878 359 CDD bac_FRK 24 326 - -
Pumo3g00878 359 Pfam pfkB family carbohydrate kinase 23 330 IPR011611 -
Pumo3g00878 359 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 276 289 IPR002173 GO:0016301
Pumo3g00878 359 FunFam Probable fructokinase-2 22 342 - -
Pumo3g00878 359 Gene3D - 21 339 IPR029056 -
Pumo3g00878 359 PRINTS Ribokinase signature 205 220 IPR002139 GO:0016301
Pumo3g00878 359 PRINTS Ribokinase signature 50 69 IPR002139 GO:0016301
Pumo3g00878 359 PRINTS Ribokinase signature 247 258 IPR002139 GO:0016301
Pumo3g00878 359 PANTHER HEXOKINASE FAMILY MEMBER 24 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00878 Pumo-Chr3 13694986 13698364 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00878 K00847 - gmx:100818404 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02679 6 64055161 64057216 Pumo3g00878 3 13694986 13698364 ECH
Pumo3g00878 3 13694986 13698364 Pumo3g00878 3 13694986 13698364 ECH
Pumo6g02679 6 64055161 64057216 Pumo3g00878 3 13694986 13698364 PCT