Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00709 ATGAAAAACTTCCATACAGCACTACTTATCTTCTTCATTGGGTTTGTGTCCTCAAGTCTGTTTCAAGTTTCTGTTGCATCTGTTGTTTCAACAGGAGATTTCAATAAGGACTTCTTTGTGATATGGTCTCCTACCCATGTGAACACATCTGCTGATGGACAAACAAGAAACTTGAAACTGGACCAAGAATCTGGAGCTGGTTTTGCATCAAACCAGATGTTTTTATTTGGGCAAATTGACATGCAAATCAAACTAGTGCCAGGTGATTCTGCAGGCACAGTCCTGGCCTATTATCTTACCTCTGATCAACCTAATCGAGATGAGATAGACTTTGAGTTTCTTGGCAATGTCTCTGGGCAGCCATATATTCTACAAACAAATATTTTCGCAGATGGAACTGACAATCGAGAGGAGAGGATTTATCTGTGGTTTGATCCTACAAAGGACTTCCATACTTATTCGGTGTTGTGGAACATGCACCAGATTGTGTTAATGGTGGATATGATTCCTATAAGAGTGTATAGAAACCATGCGGACAAGGGTGTGGCATTTCCTAGATGGCAGCCAATGAGTCTGAAAGCGACCCTGTGGAATGGTGATAGCTGGGCAACACGAGGTGGCCAAGATAAGATTGATTGGACAAAGGGTCCCTTCATAGCTTCATTCAGAAATTACAAGATTGATGCTTGTGTGTGGAAAGGGAACCCAAGGTTTTGCAGAGCAGCTAGTCCTACCAATTGGTGGAACCAATACAGCTCTAGCACACTGACGTCCACACAAAGAAGGTGGTTCAAATGGGTCAGGAAATACCACATGATTTATGATTACTGCCAAGACAATGAGAGGTTCCAAAACAATCTTCCAAGGGAATGTTCTCTTCCCAAGTATTGA 891 0.422 MKNFHTALLIFFIGFVSSSLFQVSVASVVSTGDFNKDFFVIWSPTHVNTSADGQTRNLKLDQESGAGFASNQMFLFGQIDMQIKLVPGDSAGTVLAYYLTSDQPNRDEIDFEFLGNVSGQPYILQTNIFADGTDNREERIYLWFDPTKDFHTYSVLWNMHQIVLMVDMIPIRVYRNHADKGVAFPRWQPMSLKATLWNGDSWATRGGQDKIDWTKGPFIASFRNYKIDACVWKGNPRFCRAASPTNWWNQYSSSTLTSTQRRWFKWVRKYHMIYDYCQDNERFQNNLPRECSLPKY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00709 296 Gene3D - 20 295 - -
Pumo3g00709 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 9 222 IPR000757 GO:0004553|GO:0005975
Pumo3g00709 296 Pfam Glycosyl hydrolases family 16 35 215 IPR000757 GO:0004553|GO:0005975
Pumo3g00709 296 PIRSF EndGlu_transf 1 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo3g00709 296 ProSitePatterns Glycosyl hydrolases family 16 active sites. 108 118 IPR008263 GO:0004553|GO:0005975
Pumo3g00709 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 294 IPR013320 -
Pumo3g00709 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 243 291 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pumo3g00709 296 CDD GH16_XET 30 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo3g00709 296 FunFam Xyloglucan endotransglucosylase/hydrolase 21 293 - -
Pumo3g00709 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 31 291 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00709 Pumo-Chr3 10511639 10513486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00709 58 296 Glycoside Hydrolase AT2G14620 71.548 2.22e-135 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00709 K08235 - gmx:100783152 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00709 3 10511639 10513486 Pumo3g00709 3 10511639 10513486 ECH