Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00657 ATGGCCATCGACATCGAAACCTTGGAAGACAGGTATATTGATTCTTGCAGGAGACATGGTGTTTTGCCTAATTCCTCTATTTTGTCAAGCCTTTTCAAGGCTGAGGTCAAAAAGTCCAACTATGAGCTGTGCAGCCTGGAGATTTTAATTGATGACCTAAAGGATGTTGATATTGCTCCACTTCTTGACTTGTGCATGAACTTTGATGCTTCTGAAATAGAGGCTGTTGATGTACGTAACGAATCATCATGTGTATTAAATGGAGAATATGCATTATCATTGATGCGTGCTATTAATCAAAAGCTTCGAGTAGTCCATCTACAGGATCTGTCATTTGGAAAAGACTTCTTACGGGATATTTCACAAAGAGGTTTGGCATGCCAAGTTTTGACATTGAGGTGTTCACGTTTCCGGAAGCTGAACTTAATGGGGGAGTTCATGCATATACACACCCTAAATCTTGATTTCAGTTCTTCCCTTACCAGTTTCCAGGAGGACTGTTTTAATCGTATGCCCAGTCTAATGCGCCTCTCAATGTGTGATACACGGATTACAAATCTTTGGACAACTGTTGCAGCTCTCTCTAAGCTTCCTTCTTTGGTTGAATTGAGGTTTCAATATTGGCAGTATTGCAATGATGCTGGGACATCTTTTTTCTCATCCAGTGGGAAGTCTGATGGCACTGCTGATTTTAGCCTGCTTGATAGAGTTCCTTTTATTGGTGAACCCTACACTGATACAATAGAACTGACAGATCCCAGCTTTAGTGCTGAAGATCCTCTAAGAAATTTTTATTCCTTTGATGAAGAAGTTATAAATCATGATGTTCAAAGCATGGTTGAGGATTCATCAGATGACAGTGAAGTTGACTTTACTAGTCGTCATCATAGATACTGGTTGTCAGATGTTTTTCCTGGGTGGAGTTCAGAAGTGCCTCTTCAGAATGAGTGGTTCACATTACAGAATGAAGATGGAGAAGAGTCATCGCTAGGTGCTTTTACAGACCATATTGCTGATGTTTCTATGAAGTATATTTCTCGTCATGCATCACCAATATGCTATGAGAAGCATTACAGAGAGTTCATGATAGCTTCATTACCGAATCTAAAAAATTTAGATAATATGCCAATCAGAAAGATTGACAAGGAAAGGGCTACCGGAGTATTTTCTCAATACTTTGAATATCTTCCATATAAATGGAAGCACAAAGAGAGTGTTGTAAGTATCTTACAGAAGAGAGAAATAAAATCAGGCCACAATAAGGTGCAATCTTCTAAGCATAGGCCATCATATCCTTCTGGAAAGTCCCAATATTTTTATACTAGGTCTCTTTCTGCTGCTAAATTGGGGTCTTCAACTTGGCCTTTCTTGCACCCCCTTTCTCTATTAGGATGTGAATTGGACAAGGGCTTTCATCCTAGGCAGTTTGAGTACCATCCATCTGACTCCAGTTTGATGGTCTTTGGAACTTTAGATGGTGAAGTAGTTGTCATCAACCATGAGAATGAACATATTGTGAGTTATATCCCGTCACTTGGAGCAATGAATAGTGTTTTGGGTCTCTGTTGGCTCAAAAAATATCCCTCCAAGCTTATAGCAGGATCAGACAATGGTTCCTTGAAATTGTATGACATCCACCATATACCAAGAAAAGTTACTGGCATACATGGGAACTTTGGTTGTGTTACCTTTGATGAATTTGACCAGTTGACATCTGTTCATGTTAACTCTACGGATGAACTATTTCTTGCAAGTGGTTACTCAAGAAATGTTGCTTTATATGACATCAACAGTGGGAAGCGCTTACAAGTGTTCACAGATATGCATCATGGGCATATTAATGTAGTCAAGTTTGCTAATCATTCCCCATCAATTTTTGCCACTTCATCATTTGATCACGATGTCAAGATGTGGGACTTGAGACAAAAACCAATACACCCTTGCTTCACTGTTTCAAGCTCCAGAGGAAATGTGATGGTTTGCTTTTCTCCAGATGATCAATATATTCTTGCATCAGCGGTTGATAATGAGGTTAGACAATATCTGGCTGTTGATGGTAGGCTTCACTTGGTTTTTGATATAGCTCCCACTGAAAGTTCTCAAAATTACACCCGTTCTTATTACATGAATGGGAGGGACTACATCATAAGTGGGAGTTGTGATGAACACGTCCGAATTTGCTGTGCTCAAACAGGGAGGCGCCTGAGAGATATATCCCTTGAGGGAAGAAACTTGGGAAGTTCTGTGTTTGTTCAATCTTTGAGGGGTGATCCTTTCCGAGATTTCAATATGAGCGTGTTAGCAGCTTACATGCGGCCAGGCTCCAAGTCTAAAATTGTCAAGATCAACTTACTAGCATCTAGTGGGCATGCCAACAAGGATTATTTTGATGATCTGCGCCCTTGCCCGTTCCACAGTATGGGAGCTTGA 2430 0.4021 MAIDIETLEDRYIDSCRRHGVLPNSSILSSLFKAEVKKSNYELCSLEILIDDLKDVDIAPLLDLCMNFDASEIEAVDVRNESSCVLNGEYALSLMRAINQKLRVVHLQDLSFGKDFLRDISQRGLACQVLTLRCSRFRKLNLMGEFMHIHTLNLDFSSSLTSFQEDCFNRMPSLMRLSMCDTRITNLWTTVAALSKLPSLVELRFQYWQYCNDAGTSFFSSSGKSDGTADFSLLDRVPFIGEPYTDTIELTDPSFSAEDPLRNFYSFDEEVINHDVQSMVEDSSDDSEVDFTSRHHRYWLSDVFPGWSSEVPLQNEWFTLQNEDGEESSLGAFTDHIADVSMKYISRHASPICYEKHYREFMIASLPNLKNLDNMPIRKIDKERATGVFSQYFEYLPYKWKHKESVVSILQKREIKSGHNKVQSSKHRPSYPSGKSQYFYTRSLSAAKLGSSTWPFLHPLSLLGCELDKGFHPRQFEYHPSDSSLMVFGTLDGEVVVINHENEHIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIHHIPRKVTGIHGNFGCVTFDEFDQLTSVHVNSTDELFLASGYSRNVALYDINSGKRLQVFTDMHHGHINVVKFANHSPSIFATSSFDHDVKMWDLRQKPIHPCFTVSSSRGNVMVCFSPDDQYILASAVDNEVRQYLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCDEHVRICCAQTGRRLRDISLEGRNLGSSVFVQSLRGDPFRDFNMSVLAAYMRPGSKSKIVKINLLASSGHANKDYFDDLRPCPFHSMGA 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00657 809 SMART LRRcap_2 355 373 IPR003603 -
Pumo3g00657 809 SMART WD40_4 644 682 IPR001680 GO:0005515
Pumo3g00657 809 SMART WD40_4 598 639 IPR001680 GO:0005515
Pumo3g00657 809 SMART WD40_4 502 544 IPR001680 GO:0005515
Pumo3g00657 809 SMART WD40_4 560 595 IPR001680 GO:0005515
Pumo3g00657 809 SUPERFAMILY RNI-like 91 217 - -
Pumo3g00657 809 Gene3D - 472 757 IPR015943 GO:0005515
Pumo3g00657 809 Pfam WD domain, G-beta repeat 605 639 IPR001680 GO:0005515
Pumo3g00657 809 PANTHER BNAC09G30780D PROTEIN 2 808 IPR046377 GO:0071493|GO:0080008
Pumo3g00657 809 SUPERFAMILY WD40 repeat-like 472 738 IPR036322 GO:0005515
Pumo3g00657 809 Gene3D Ribonuclease Inhibitor 91 224 IPR032675 -
Pumo3g00657 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 641 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00657 525 725 Miscellaneous Gene Families AT5G08390 23.039 9.67e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00657 - - gmx:100806443 1523.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00657 3 9847702 9855119 Pumo3g00657 3 9847702 9855119 ECH