Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00616 ATGCAAAACCTCAACTTCCTTTCCCTAACCATCATTTCCCTCTATGTCATCCACTTCCACTCCACAAACAACAACATCCTAGTCCAAGCCCTGACCTCAGCCTCGGACATTGCAGCCCTCAAAGCCTTCAAGGCCTCAATCAAACCCTCCTCCATCACACCCTGGTCATGCCTCGCCTCATGGAACTTCACAACCGACCCATGCTCACTCCCTCGCCGCACCTCCTTCATCTGCGGCCTCACCTGCACCCAAGACTCCACAAGAATCAACCAAATCACTCTCGACCCAGCAGGGTACTCAGGCACACTCACCCCACTAATCTCTAAACTCACACAACTCACCACACTAGACATAGCTGAAAACAACTTCTTCGGCCCAATCCCCTCTTCAATTTCCTCCCTCTCCAACCTCCAAACCTTAACCCTCCGATCCAATTCCTTCTCAGGCCCAATCCCTCCCTCCATAACCACCTTCAAATCACTCCAATCTCTCGACCTCGCACACAATTCTCTCTCTGGGTATCTCCCAAACTCCATGAACTCCCTCACCACACTCCGCAGACTCGATCTCAGCTTCAACAAACTAACCGGTTCAATCCCGAAGCTTCCACCCAACTTGCTTGAACTCGCGATCAAGGCCAATTCTCTATCTGGGCCTCTCCAAAAACAGAACTTTGAAGGGCTGAACCAGTTGGAAGTGGTGGAGCTCAGCGAGAACGCGCTTCGCGGAATCGTGGAGTCGTGGTTCTTCCTTTTACCGTCGCTGCAGCAAGTGGACTTGGCCAACAACTCCTTCACGGGGGTGCAGATCTCGAGGCCAGTCGCGGCGCGTGGGGAAAGCAGCAACAGCAACCTCGTCGCGCTCAACCTCGGGTTTAACAGAATCCGAGGCTACGCGCCCGCGAATCTCGCCGCGTATCCCGCGCTGTCGTTCCTGTCGATTCGCTACAACGCGCTGCGTGGCGTGATCCCGCTGGAGTACGGGCAGATCAAGTCCATCAAGAGGCTCTTCCTCGACGGAAACTTCCTCGTCGGAAAGCCGCCGGCGGGGCTGGTCGCCGCCGGCACGGCGGTTTCCGGCAGCCTGGGGGACAATTGTCTGCAGGCGTGTCCAGGGTCGTCGCAGCTGTGCTCGCCCGCACAGAAACCTAGCTCTGTTTGCAAGCAAGCCTACCGTGGTAGACCAACACCGTAA 1194 0.5586 MQNLNFLSLTIISLYVIHFHSTNNNILVQALTSASDIAALKAFKASIKPSSITPWSCLASWNFTTDPCSLPRRTSFICGLTCTQDSTRINQITLDPAGYSGTLTPLISKLTQLTTLDIAENNFFGPIPSSISSLSNLQTLTLRSNSFSGPIPPSITTFKSLQSLDLAHNSLSGYLPNSMNSLTTLRRLDLSFNKLTGSIPKLPPNLLELAIKANSLSGPLQKQNFEGLNQLEVVELSENALRGIVESWFFLLPSLQQVDLANNSFTGVQISRPVAARGESSNSNLVALNLGFNRIRGYAPANLAAYPALSFLSIRYNALRGVIPLEYGQIKSIKRLFLDGNFLVGKPPAGLVAAGTAVSGSLGDNCLQACPGSSQLCSPAQKPSSVCKQAYRGRPTP 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00616 397 SUPERFAMILY L domain-like 61 348 - -
Pumo3g00616 397 FunFam Nuclear pore complex protein NUP107 33 201 - -
Pumo3g00616 397 PRINTS Leucine-rich repeat signature 161 174 - -
Pumo3g00616 397 PRINTS Leucine-rich repeat signature 182 195 - -
Pumo3g00616 397 Pfam Leucine rich repeat 204 264 IPR001611 GO:0005515
Pumo3g00616 397 Pfam Leucine rich repeat 135 195 IPR001611 GO:0005515
Pumo3g00616 397 SMART LRR_typ_2 228 251 IPR003591 -
Pumo3g00616 397 SMART LRR_typ_2 110 134 IPR003591 -
Pumo3g00616 397 SMART LRR_typ_2 182 209 IPR003591 -
Pumo3g00616 397 SMART LRR_typ_2 158 181 IPR003591 -
Pumo3g00616 397 SMART LRR_typ_2 252 273 IPR003591 -
Pumo3g00616 397 Gene3D Ribonuclease Inhibitor 204 378 IPR032675 -
Pumo3g00616 397 Gene3D Ribonuclease Inhibitor 33 203 IPR032675 -
Pumo3g00616 397 Pfam Leucine rich repeat N-terminal domain 34 69 IPR013210 -
Pumo3g00616 397 ProSiteProfiles Leucine-rich repeat profile. 184 206 IPR001611 GO:0005515
Pumo3g00616 397 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 14 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00616 Pumo-Chr3 9421952 9424096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00616 39 391 Receptor kinase-like Gene Family AT3G05360 31.099 3.73e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00616 - - gmx:100801713 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00616 3 9421952 9424096 Pumo3g00616 3 9421952 9424096 ECH