Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00193 ATGGAGGCAGATATTGATCACTACGCGGTGCTAGGGTTACCGTCGGGCGAAGAAGGCGCGAAGCTCACAGAGAAAGAAATCAACAAGGCCTACAGATGGAAGGCTCTCGAATTGCACCCTGACAAGAGGCCCGACGACCCCAACGCCGCCGCCAACTTCCAACAGCTCCGAACCTCCTACGACATCCTCAGGGACGACAAGGCCCGAAAGCTCTTCGACGACCTCCTCCGCGTCAAGCGCGAGCGAGAGCTCCGCAATTCGCAGCGCGACGGAAAGCGCCGCAAGATGGTGTCCGATCTCGAGCGCCGAGAGCGCGACGCCAACGCCCCGGATCCCGCCACGAAGGAGCGCGAAGAGGAGGCCAGGATTGCAAGGCAGCTCAAGGAGGAGATCGCCAGGATTCGCGCCATGCACGGGAAGAAAGCGGCGGAGGAGGCGCCGCCACCGGCGAAGGAGAACGAGAGTGGCGGTGGCGGTGGAGTGGATCAAGAGAAGGTTCTGAAGGTTTTGTGGGAGAAGGTCGGTGAGGATTATTCGGCTGATAAGTTGAGGGAATTGTTTTCCGAGTTTGGTGAAGTGGAAGATGTTGTCATCAAAGGGAGTAAGAAGAAGGGTTCTGCACTCGTTGTTATGGCCAGTAAAGAAGGAGCTGTTGCTGCTACTGGGAGTGTGATTGGTCATCTTGCTAATCCGTTGCTTGTTTTACCTCTTAAGCCAGCAACTGTGGCCGATTCATCGAGTGTTCCGAAGTCTGCTGAAACTGCCAGGATGAGTAATCTGGTTGGTGCTGGGTATCAAGCTTTTGAGGATTCTGTTCTGAAGAAACTGCAAAAGGCTGCGGAAAAACAAAGATGA 855 0.5532 MEADIDHYAVLGLPSGEEGAKLTEKEINKAYRWKALELHPDKRPDDPNAAANFQQLRTSYDILRDDKARKLFDDLLRVKRERELRNSQRDGKRRKMVSDLERRERDANAPDPATKEREEEARIARQLKEEIARIRAMHGKKAAEEAPPPAKENESGGGGGVDQEKVLKVLWEKVGEDYSADKLRELFSEFGEVEDVVIKGSKKKGSALVVMASKEGAVAATGSVIGHLANPLLVLPLKPATVADSSSVPKSAETARMSNLVGAGYQAFEDSVLKKLQKAAEKQR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00193 284 Pfam DnaJ domain 6 73 IPR001623 -
Pumo3g00193 284 Coils Coil 117 137 - -
Pumo3g00193 284 CDD DnaJ 6 65 IPR001623 -
Pumo3g00193 284 SUPERFAMILY RNA-binding domain, RBD 174 221 IPR035979 GO:0003676
Pumo3g00193 284 SUPERFAMILY Chaperone J-domain 3 77 IPR036869 -
Pumo3g00193 284 MobiDBLite consensus disorder prediction 136 161 - -
Pumo3g00193 284 Gene3D DnaJ domain 1 102 IPR036869 -
Pumo3g00193 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 220 IPR000504 GO:0003723
Pumo3g00193 284 Gene3D - 159 247 IPR012677 -
Pumo3g00193 284 MobiDBLite consensus disorder prediction 85 122 - -
Pumo3g00193 284 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Pumo3g00193 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 239 IPR000504 GO:0003723
Pumo3g00193 284 SMART dnaj_3 5 68 IPR001623 -
Pumo3g00193 284 PANTHER DNAJ DOMAIN CONTAINING PROTEIN, EXPRESSED 1 283 - -
Pumo3g00193 284 CDD RRM_DNAJC17 165 237 IPR034254 -
Pumo3g00193 284 PRINTS DnaJ domain signature 8 26 IPR001623 -
Pumo3g00193 284 PRINTS DnaJ domain signature 31 46 IPR001623 -
Pumo3g00193 284 PRINTS DnaJ domain signature 48 68 IPR001623 -
Pumo3g00193 284 ProSiteProfiles dnaJ domain profile. 6 76 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00193 Pumo-Chr3 2424679 2429603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00193 4 82 Miscellaneous Gene Families AT1G16680 35.443 8.17e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00193 K09537 - gmx:100793225 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00193 3 2424679 2429603 Pumo3g00193 3 2424679 2429603 ECH