Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00186 ATGAACAAGAGGCCAATAAGCGCCGTCTACAAGGCGCTTCCCGATCTTTGCAATCGAGAGCTCGGCCACCTACCCCCCAGAAATTTCGCTCTCCGTCTTGCCGCCTCCGAGGATCTTGTCCTTCGACTTGAATTACTCAGGAAGCTGCAAAAGCACAGGGGTTGTGTCAACACCGTGAGCTTCAATGCAGATGGTGACATTCTGGTCTCCGGTTCTGATGATTGGAGGGTTATTCTCTGGGACTGGGAAACCGGCCGTATTAGACTCTCTTTCCATTCTGGTCATGCCAACAATGTTTTCCAGGCCAAGATCATGCCTCACTCTGATGATCGTAGCATTGTCACCTGTGCTGCCGATGGACAGGTGAGACATGCTCAAAGTCTTGAAAATGGAGGAGTTAAAACTAAGTTTCTGGCCAAGCATCAAGGAAGGGCGCATAAGTTGGCTATTGAGCCTGGTAGCCCTCATATATTTTATACCTGTGGTGAAGATGGATTAGTGCAGCATTTTGATCTGAGAACTGGGGCTGCAACAGAACTTTTTACATGCCAGCCAATCAAGGATAGATGGAATTACATGCCAGTCATCCATCTTAATGCAATTGCAATTGATCCAAGGAACCCAAATCTCTTTGTGGTTGCTGGGTCTGATGAGTATACTCGACTTTATGATATTCGCAAGTATAAATGGGACGGATCATCTGATTTTGGTCAACCAACTGACTTCTTTTGCCCTCCACACTTGATTGGCAATCAGCAAGTTGGAATAACAGGCTTGGCCTTTTCTGAACAGAGAGAGCTGCTTGTGTCATACAATGATGAGTTTATTTACCTTTTTACCCAAGATATGGGTTTGGGACCAAACCCTGATCCTCCTGGGTCCCCTAAATCTATGAACAGTGATGCAAGTGAAACTGGATTTAGTCATGGATCTGTGTCATCTCAATCCAACATGGATGCTGATGAGAAAATCACCCCGCAAGTTTTTAAGGGACACAGGAATTGTGAGACAGTGAAGGGTGTTAACTTTTTTGGACCTAAATGTGAGTATGTGGTGAGTGGGTCAGATTGTGGTCGGATTTTCATATGGAAAAAGAAAGGTGGTCAGCTTATTCGTGTCATGGAAGCAGATAAGCATGTTGTGAACTGCATTGAGTCTCATCCTCATACAATGGTTCTTGCCAGCAGTGGTATTGAGCATGACATCAAGATATGGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGAAACCGAAGGCTAGGGGCTGGATGTACCGGATGGCTCCTCCTGAAGACCTGTTGCAACTGTTTACACTTCCAAGACGAAGGGTCAGGACAGAAAGCAATGGAGAAAACTCATCTACAGATCTAGACCTTCTACAGTTGATATTGACATTCAATGCCAATAGTGACAGTTCTAACGATGATGATGACGATGACGACGATGATGGAGATACAACCAGCCAAGACGACTTGTTCAGTTAG 1500 0.452 MNKRPISAVYKALPDLCNRELGHLPPRNFALRLAASEDLVLRLELLRKLQKHRGCVNTVSFNADGDILVSGSDDWRVILWDWETGRIRLSFHSGHANNVFQAKIMPHSDDRSIVTCAADGQVRHAQSLENGGVKTKFLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGAATELFTCQPIKDRWNYMPVIHLNAIAIDPRNPNLFVVAGSDEYTRLYDIRKYKWDGSSDFGQPTDFFCPPHLIGNQQVGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGPNPDPPGSPKSMNSDASETGFSHGSVSSQSNMDADEKITPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGQLIRVMEADKHVVNCIESHPHTMVLASSGIEHDIKIWTPKALEKATLPKNIEQKPKARGWMYRMAPPEDLLQLFTLPRRRVRTESNGENSSTDLDLLQLILTFNANSDSSNDDDDDDDDDGDTTSQDDLFS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00186 499 MobiDBLite consensus disorder prediction 477 493 - -
Pumo3g00186 499 SUPERFAMILY WD40 repeat-like 41 405 IPR036322 GO:0005515
Pumo3g00186 499 Pfam WD domain, G-beta repeat 327 364 IPR001680 GO:0005515
Pumo3g00186 499 Pfam WD domain, G-beta repeat 45 81 IPR001680 GO:0005515
Pumo3g00186 499 MobiDBLite consensus disorder prediction 295 318 - -
Pumo3g00186 499 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 86 - -
Pumo3g00186 499 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 14 486 IPR045151 -
Pumo3g00186 499 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
Pumo3g00186 499 Gene3D - 35 408 IPR015943 GO:0005515
Pumo3g00186 499 SMART WD40_4 42 81 IPR001680 GO:0005515
Pumo3g00186 499 SMART WD40_4 322 364 IPR001680 GO:0005515
Pumo3g00186 499 SMART WD40_4 84 126 IPR001680 GO:0005515
Pumo3g00186 499 SMART WD40_4 367 406 IPR001680 GO:0005515
Pumo3g00186 499 SMART WD40_4 189 224 IPR001680 GO:0005515
Pumo3g00186 499 SMART WD40_4 241 280 IPR001680 GO:0005515
Pumo3g00186 499 SMART WD40_4 131 171 IPR001680 GO:0005515
Pumo3g00186 499 MobiDBLite consensus disorder prediction 287 318 - -
Pumo3g00186 499 MobiDBLite consensus disorder prediction 474 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00186 Pumo-Chr3 2366960 2371624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00186 307 411 Miscellaneous Gene Families AT5G08390 25.000 8.61e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00186 K11804 - gmx:100791300 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00186 3 2366960 2371624 Pumo3g00186 3 2366960 2371624 ECH