Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01688 ATGGCGTCCGTGTACATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGATCAGCTTCCGAGGGACGCCTCCGACATCCTCGACATCCTCAAGGCCGAACAAGCCCCTCTCGATCTCTGGCTCATCATTGCGAGGGAGTACTTCAAGCAGGGAAAACTTGATCAATTTCGCCAGATTTTGGAGGAAGGATCCAGTCCAGAAATTGATGACTATTATGCTGATGTTCGATATGAGAGGATTGCTATCTTAAATGCCCTTGGAGCTTACTACAGCTACCTTGGAAAAATAGAGACAAAACAAAGAGAAAAGGAGGAGCATTTCATTTTGGCAACACAGTATTACAATAAAGCATCTAGGATTGACATGCACGAGCCCTCCACTTGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGTGAAGTAGAACAGGCGTCTGCTGCATTTAAGATTGTGTTAGATGGAGACCGTGATAATGTTCCTGCTCTTTTGGGCCAGGCATGTGTTGAGTTCAACCGTGGACGATATTCTGATTCACTTGAGTTGTATAAGAGAGCATTGCAAGTGTATCCCAATTGCCCGGCAGCTGTGAGACTTGGCATAGGTCTATGCCGCTACAAATTAGGTCAATTTGAAAAAGCTCAACAGGCATTTGAGCGTGTTTTACAGCTAGATCCAGAAAATGTTGAGGCTCTTGTTGCCCTTGCAATAATGGACTTGCGTACTAATGAAGCTACTGGAATCAGGACGGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCGTACTGTGCAATGGCTCTGAATTATCTTGCGAATCATTTCTTCTTCACTGGTCAACATTTTTTAGTAGAGCAACTAACTGAAACTGCATTGGCTGTTACCAATCATGGCCCAACAAAGTCTCACTCTTACTACAATTTAGCACGCTCATATCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCTGTCAAGGAAGTCAACAAGCCCCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTGCAGATAAAGTTGGGAGATTTTAAAAGCGCACTCTCAAACTTTGAAAAGGTCTTGGAAGTGTACCCAGATAATTGTGAGACATTGAAAGCACTTGGGCATATATATGTTCAACTTGGTCAAACTGACAAGGGCCAGGACTTCATTAGGAAAGCTACAAAAATTGATCCCCGTGATGCCCAGGCATTTCTTGAGCTGGGAGAATTGTTAATTCTTTCCGACACAGGAGCTGCACTGGATGCATTCAAAACTGCTCGTACTCTTTTTAAGAAGGGAGGTCAAGAAGTACCAATTGAATTGCTCAATAATATTGGTGTCCTTCAGTTTGAAAGGGGGGAATTTGAGCTTGCTCAACAAACATTTAAGGAGGCACTAGGTGATGGTATTTGGCTATCTTTCATCAACGAGGAAAATAAGTCTTCCATTGATGCTGCTACCTCTACTCTTCAATTCAAGGACATGCAATTATTTCGTGACCTTGAAAGCAATGGTCACCATGTGGAAGTACCTTGGGATAAAGTCACTGTACTCTTTAACTTGGCTAGGTTACTTGAGCAGTTAAATGATTCTGGAACTGCAAGCATATTGCATCGCCTTATCTTGTTCAAGTATCCAGACTATATTGATGCATATCTGAGGCTAGCTGCAATTGCAAAAGCTCGGAACAACATTCTGTTAAGCATTGAACTGGTTAATGATGCCTTGAAGGTGAATGACAAGTGTCCCAATGCATTATCTATGCTTGGTGAGTTGGAGTTGAAAAATGATGATTGGGTAAAGGCAAAAGAAACTCTCCGTGCAGCTAGTGATGCAACTGATGGCAAGGACTCATATGCTACTCTTTCTCTGGGAAACTGGAACTACTTTGCAGCAGTTCGCAATGAGAAGAGAAATCCAAAGCTAGAAGCTACTCATTTGGAAAAGGCCAAAGAACTTTATACCAGAGTTCTGATGCAGCATACTTCTAATTTATATGCTGCCAATGGTGCTGGGGTAGTCTTGGCGGAAAAGGGCCATTTTGATGTGTCAAAAGATATCTTTACACAGGTTCAAGAAGCTGCCAGTGGTAGCGTTTTTGTCCAGATGCCAGATGTTTGGATAAATCTGGCACATGTTTATTTTGCTCAGGGGAATTTTACTTTGGCTGTGAAAATGTATCAAAACTGCTTGCGGAAGTTTTATTATAACACAGACTCTCAAATACTTCTATATTTAGCTCGTACACATTATGAGGCTGAACAGTGGCAAGACTGTATAAAAACGCTACTGAGAGCCATACATTTGGCACCCTCGAACTATACTTTAAGGTTTGATGCAGGGGTTGCAATGCAAAAGTTTTCAGCATCAACACTACAAAAGGCAAAGAGGACTGCAGATGAGGTGAGAGCAACTGTTGCTGAGCTGCAAAATGCTGTTCGTGTATTTAGTCAGTTGTCTGCTGCTTCCAACCTACATATTCATGGGTTTGATGAGAAGAAAATTGACACTCATGTTGGATACTGCAACCACTTACTTTCGGCTGCAAAAGTTCATCTTGAAGCAGCTGAGCGCGAAGAGCAGCAAGTACGACAGAGACAAGAACTTGCTCGTCAGGTTGCATTGGCTGAGGAAGCCCGACGAAAGGCTGAAGAGCAAAGGAAATTTCAGATGGAAAGGAGAAAACAAGAGGACGAGCTAAAGCGAGTGCAACAACAGGAGGAACATTTTAGGCGTGTTAAGGAGCAATGGAAGAGCAGCAGTCATTCAAAACGGAGAGAAAGATCAGATGATGAAGAGGGAGGGACTGGTGAGAAAAAGAGAAGAAAAGGTGGAAAGCGGAGAAAGAAGGATAAGCACTCAAAATCGCGCTATGACACAGAGGAACCAGAAACTGATATGATGGATGAACAGGAAATGGAGGATGAAGAAGCTGACTACAGAGAGGAGCCCCAAACTCTGATGAATGATGATGCTGAGGAAAATGCTCAGGGTCTTCTTGCAGCAGCTGGGCTTGAAGATTCTGATGCAGATGAGGAAACGGCTGCACCTTCCTCAAGCATAGCCCGGCGAAGGCAAGCATTATCAGAATCTGATGATGATGAACCAGTGCAAAGGCAGTCAAGTCCAGTAAGAGAAAATTCTGCTGATATACAGTTGAGTGATGGAGAAATCAGGGATGGGGATAATAAGACAAATGGAGATGATGCCAGTGATGAGGAGAAACAATATTGA 3261 0.4321 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRALQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVEALVALAIMDLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGIWLSFINEENKSSIDAATSTLQFKDMQLFRDLESNGHHVEVPWDKVTVLFNLARLLEQLNDSGTASILHRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLMQHTSNLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYYNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFRRVKEQWKSSSHSKRRERSDDEEGGTGEKKRRKGGKRRKKDKHSKSRYDTEEPETDMMDEQEMEDEEADYREEPQTLMNDDAEENAQGLLAAAGLEDSDADEETAAPSSSIARRRQALSESDDDEPVQRQSSPVRENSADIQLSDGEIRDGDNKTNGDDASDEEKQY 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01688 1086 Coils Coil 801 821 - -
Pumo2g01688 1086 MobiDBLite consensus disorder prediction 895 949 - -
Pumo2g01688 1086 SUPERFAMILY TPR-like 449 703 IPR011990 GO:0005515
Pumo2g01688 1086 FunFam Rna polymerase-associated protein ctr9 651 835 - -
Pumo2g01688 1086 SUPERFAMILY TPR-like 106 295 IPR011990 GO:0005515
Pumo2g01688 1086 SUPERFAMILY TPR-like 303 475 IPR011990 GO:0005515
Pumo2g01688 1086 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Pumo2g01688 1086 SMART tpr_5 376 409 IPR019734 GO:0005515
Pumo2g01688 1086 SMART tpr_5 197 230 IPR019734 GO:0005515
Pumo2g01688 1086 SMART tpr_5 558 591 IPR019734 GO:0005515
Pumo2g01688 1086 SMART tpr_5 448 488 IPR019734 GO:0005515
Pumo2g01688 1086 SMART tpr_5 749 782 IPR019734 GO:0005515
Pumo2g01688 1086 SMART tpr_5 713 746 IPR019734 GO:0005515
Pumo2g01688 1086 SMART tpr_5 524 557 IPR019734 GO:0005515
Pumo2g01688 1086 SMART tpr_5 128 161 IPR019734 GO:0005515
Pumo2g01688 1086 SMART tpr_5 592 625 IPR019734 GO:0005515
Pumo2g01688 1086 SMART tpr_5 342 375 IPR019734 GO:0005515
Pumo2g01688 1086 SMART tpr_5 162 195 IPR019734 GO:0005515
Pumo2g01688 1086 SMART tpr_5 305 338 IPR019734 GO:0005515
Pumo2g01688 1086 Coils Coil 855 922 - -
Pumo2g01688 1086 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Pumo2g01688 1086 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1073 IPR031101 GO:0006355|GO:0016570
Pumo2g01688 1086 FunFam protein CTR9 homolog 507 650 - -
Pumo2g01688 1086 Gene3D Tetratricopeptide repeat domain 25 159 IPR011990 GO:0005515
Pumo2g01688 1086 FunFam protein CTR9 homolog 9 336 - -
Pumo2g01688 1086 SUPERFAMILY TPR-like 654 802 IPR011990 GO:0005515
Pumo2g01688 1086 MobiDBLite consensus disorder prediction 895 1086 - -
Pumo2g01688 1086 Gene3D Tetratricopeptide repeat domain 160 249 IPR011990 GO:0005515
Pumo2g01688 1086 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Pumo2g01688 1086 MobiDBLite consensus disorder prediction 1035 1049 - -
Pumo2g01688 1086 MobiDBLite consensus disorder prediction 1061 1086 - -
Pumo2g01688 1086 Gene3D Tetratricopeptide repeat domain 649 835 IPR011990 GO:0005515
Pumo2g01688 1086 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Pumo2g01688 1086 Pfam Tetratricopeptide repeat 718 781 - -
Pumo2g01688 1086 MobiDBLite consensus disorder prediction 972 990 - -
Pumo2g01688 1086 Gene3D Tetratricopeptide repeat domain 256 638 IPR011990 GO:0005515
Pumo2g01688 1086 Pfam Tetratricopeptide repeat 354 412 - -
Pumo2g01688 1086 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Pumo2g01688 1086 Pfam Tetratricopeptide repeat 169 228 - -
Pumo2g01688 1086 FunFam Protein CTR9 homolog 338 479 - -
Pumo2g01688 1086 ProSiteProfiles TPR repeat profile. 713 746 IPR019734 GO:0005515
Pumo2g01688 1086 ProSiteProfiles TPR repeat profile. 162 195 IPR019734 GO:0005515
Pumo2g01688 1086 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01688 K15176 - gmx:100794371 1956.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01688 2 31737959 31755188 Pumo2g01688 2 31737959 31755188 ECH