Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01630 ATGGAGACTCCTCCGCAACAAGGCGTGGTGAAGAAGAAGGAGACAAGGGGCCGAAAACCCAAGCCAAAGGACGAACAGCAACAACACGCGAAGGCGTTGAAGGAAGGGAGAAAAACACAGCAACATCAGCAGCAACAGCAATCAGCAACAACCTTCGGTGGACGAGAAATACACGCAATGGAAGTCCCTTGTCCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTCGTCTGGCCCTCTCTCTCTTGCCGACTGATGGCAGCGTGCCGAATACTCTGGTGATTGCGAATTGCGAGGTTGTGAAGCCTAGGGTTGCGGCTGCTGAGCACATTTCGCAGTTTAATGAAGAGGCGCGGTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGCGAGGTTAACAGAATTAGGGAATTACCACAAAATTCCAAGATAGTGGCTACACATACAGACAGCCCTGATGTCCTTGTTTGGGATGTTGAAAGTCAACCTAACCGCCATGCTGTCCTTGGAGCTACAAACTCTCGTCCTGATTTGATATTGACCGGACACCAAGATAATGCAGAATTTGCTCTTGCAATGTGCCCAACTGAACCCTATGTTCTTTCAGGAGGAAAGGACAAAACAGTGGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCCACAGACTCCAAATCTGGTGGGTCAATTATCAAATCAAACTCTAAATCTGGAGAAGGCAATGATAAAACTGCTGATGGCCCTACTGTTGGACCACGAGGTATCTATTGTGGGCATGAGGATACTGTTGAAGATGTGACTTTCTGCCCATCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTGTGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATGATAATCTGATTCTCACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGTCGCAATCTCACCACTAATGGAGTTGGGTCACCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCTGAAGATGGTCTCTTGAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGGTCTGGAAAATCAATAAATTCTCCTCCAGGGTTGTTTTTCCAACATGCAGGTCATAGGGATAAAGTAGTTGACTTCCATTGGAATGCATATGATCCATGGACGATTGTTAGTGTGTCTGATGACTGTGAAAGTACTGGAGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGATGAGGTTTTGGCTGAGCTGGAGAAATTCAAATCTCATGTGGTGGCGTGTGCTTCAAAGACTGAAAAATGA 1455 0.4619 METPPQQGVVKKKETRGRKPKPKDEQQQHAKALKEGRKTQQHQQQQQSATTFGGREIHAMEVPCPCPLRLARQPQPRLALSLLPTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATDSKSGGSIIKSNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSINSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVACASKTEK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01630 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 338 - -
Pumo2g01630 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 389 IPR001680 GO:0005515
Pumo2g01630 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 389 - -
Pumo2g01630 484 PANTHER WD40 REPEAT FAMILY 84 467 - -
Pumo2g01630 484 SUPERFAMILY WD40 repeat-like 121 475 IPR036322 GO:0005515
Pumo2g01630 484 MobiDBLite consensus disorder prediction 1 56 - -
Pumo2g01630 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 338 IPR001680 GO:0005515
Pumo2g01630 484 Gene3D - 17 470 IPR015943 GO:0005515
Pumo2g01630 484 Pfam WD domain, G-beta repeat 258 293 IPR001680 GO:0005515
Pumo2g01630 484 Pfam WD domain, G-beta repeat 306 338 IPR001680 GO:0005515
Pumo2g01630 484 Pfam WD domain, G-beta repeat 181 216 IPR001680 GO:0005515
Pumo2g01630 484 Pfam WD domain, G-beta repeat 348 387 IPR001680 GO:0005515
Pumo2g01630 484 MobiDBLite consensus disorder prediction 39 53 - -
Pumo2g01630 484 SMART WD40_4 347 387 IPR001680 GO:0005515
Pumo2g01630 484 SMART WD40_4 298 338 IPR001680 GO:0005515
Pumo2g01630 484 SMART WD40_4 176 216 IPR001680 GO:0005515
Pumo2g01630 484 SMART WD40_4 253 293 IPR001680 GO:0005515
Pumo2g01630 484 SMART WD40_4 405 452 IPR001680 GO:0005515
Pumo2g01630 484 MobiDBLite consensus disorder prediction 226 246 - -
Pumo2g01630 484 MobiDBLite consensus disorder prediction 7 38 - -
Pumo2g01630 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 302 IPR001680 GO:0005515
Pumo2g01630 484 MobiDBLite consensus disorder prediction 226 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01630 Pumo-Chr2 30747606 30754298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01630 262 447 Miscellaneous Gene Families AT5G08390 25.907 1.53e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01630 K10752 - gmx:100779302 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01630 2 30747606 30754298 Pumo2g01630 2 30747606 30754298 ECH