Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01439 ATGCCACAACCAAAAGAGCTTCCAGGGTTTTATTATGACCCTGAGAAGAACAGGTATTTCCCCATCAAAGGCCCCATTCCTGGCTCTTCTTCTAAGCCTAAGACCCCTGCTCTTATCTCAGCCCAAACCTCTTCCAATCAGTTACAGGAAAGTGGGAGGACTTGTTGTAGGAAGCTTAGAAACAGAACCTCGTCTAAGCTGCTTCAGGCTAGGGAGTTGGATGGTCAAAGTGTCATTGCCTCTCGCTATTGCAAAAGTAGCTTCACCGAGGAATTCCGGAAAATACAAGCATCTAAACCTGTGGTCTGGAAGTATCGGGAAACTGATAGGATGCGTATTACTGCTTTGGAACACTTGCGCGTTGATGTGCAGACATTGGAGGGGCAAACTGAAACTGATGTTTTGCTGACAGGCAGCACAAATGGCTCGATGAGTTTTTCTCAAGTTGGAGGGGTTGGGCAATATTATGATGGTGGGACAAAATGGAGGGCAGATTGTGTGAAGAATTATGTTAAAGGGAGAACAGATGAGCATAATGACGTGCTTAAGCCGGTTTTCAAACCTAATCGAGCTGCACTGCTTATGTCCTCCAGAATATCTTCTATAAGATTGGGTCCAAAGTGCTATTCTCACGCTGTCAATGATGGTCGTATTGTTGGACGTGCATTATTTACTACTTTGGGATCAGAGACATCAGGTGGATCAGTTTATACTCTTGATCTTGTTGAACCATTAAATCTTGGACCAGGTATACTGAACACATGGAGCGGACTAGAGGAAATTGCTTCTTTCAGGTCTACCATTTGGACAGCAGAATATGATTATAATAGACATCGGGCTGTAATTGGTACAAATTTGGGAGGTGCTTCAGTGGATCTGGAAACTGGGATGATATCATGGTTTTTACATTGTAAAAGTGATGTTTTTGCGCAACAGGTTGTTAATTCGGGAAATGTGATTTTATGTGGGCTAAGAAATGGGGCAATTGTCACTGTTGATTCTCGTGTGAGAAGAGAAAGCCTTTCTGGTAGACTTATTACCCATCGGATACCATATACATCTTCAGACAAGAAAGTTGGAGGTTCTAATAAGGAATGGTTTAAGCTCAAAGGAGACATATATCCTTCTCATACCATTAGGATGCCTTCATCTATATCCTGTTTGGTGTCACTTCGGTTTGATGATCAGTACTTCTTGGCAAGCTCAATGGATGGATCGATGAGGCTTTATGATCTTCGTCTACTCCAGAGGGGTGCTGTTCAATGTTATGAAGGGCATGTGAATTCTCATACTCGGATACAGATTGGTGTTGATCCAGCTGAGAGATTTGTTATGTCAGGTGGAGAGGATTGCAAGCTAAGGTTATGGAGTATCAAGTCTGGTGAACTGCTTTTTGAGGATGAGTTCTCTGATTCAGTTCTCTCCACTGTGTGCTATACAACATATGGACATAGTTTTAAAGCAGAAGAGGAAAACCAATACAAGCGCGACTCTTCTCAGGGTGCATGGCTTGGATCACTTGAAGGACTGTATTATATGTGCTGGTTATGA 1551 0.4275 MPQPKELPGFYYDPEKNRYFPIKGPIPGSSSKPKTPALISAQTSSNQLQESGRTCCRKLRNRTSSKLLQARELDGQSVIASRYCKSSFTEEFRKIQASKPVVWKYRETDRMRITALEHLRVDVQTLEGQTETDVLLTGSTNGSMSFSQVGGVGQYYDGGTKWRADCVKNYVKGRTDEHNDVLKPVFKPNRAALLMSSRISSIRLGPKCYSHAVNDGRIVGRALFTTLGSETSGGSVYTLDLVEPLNLGPGILNTWSGLEEIASFRSTIWTAEYDYNRHRAVIGTNLGGASVDLETGMISWFLHCKSDVFAQQVVNSGNVILCGLRNGAIVTVDSRVRRESLSGRLITHRIPYTSSDKKVGGSNKEWFKLKGDIYPSHTIRMPSSISCLVSLRFDDQYFLASSMDGSMRLYDLRLLQRGAVQCYEGHVNSHTRIQIGVDPAERFVMSGGEDCKLRLWSIKSGELLFEDEFSDSVLSTVCYTTYGHSFKAEEENQYKRDSSQGAWLGSLEGLYYMCWL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01439 516 PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED 1 515 - -
Pumo2g01439 516 Gene3D - 291 485 IPR015943 GO:0005515
Pumo2g01439 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 423 466 IPR001680 GO:0005515
Pumo2g01439 516 MobiDBLite consensus disorder prediction 22 44 - -
Pumo2g01439 516 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 231 478 IPR011047 -
Pumo2g01439 516 Pfam WD domain, G-beta repeat 421 457 IPR001680 GO:0005515
Pumo2g01439 516 SMART WD40_4 372 411 IPR001680 GO:0005515
Pumo2g01439 516 SMART WD40_4 416 457 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01439 Pumo-Chr2 21302202 21309985 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01439 386 466 Miscellaneous Gene Families AT5G08390 30.120 4.09e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01439 K11799 - gmx:100798753 965.296