Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01377 ATGAGGAGCAACATCATGAGCTTCAACCTATCAGGTATGGGATGTAGTGCTGGAATCATATCGATGAGTCTAGCTAAGGACTTGTTGAGAGTTCATAGGAACTCCTTGGCTTTAATAGTAAGCACAGAGACCCTAAGTCTGAATTGGTACACTGGTAAAGTCCCTTCAATGCTGCTATCTAATTGCCTATTCAGAATGGGTGGAGCAGCTATATTGATGTCTAGTAGGGTCCAAGATAAGCACAAGGCAAAGTATAAACTAGAGCATATTGTTAGAACAATCACTGCACAGGATGATCAATCTCATGGCTGTGTCTACCAACAAGTGGATCCAGAGAACAAAGAAGGCATATCTATCTCAAAGAACATAGTCAAGGTGTCTGGAGATGCACTGAAGAAAAACATAGCTTCACTAGGACCATTGGTTCTGCCTTTGAGGGAGCAATTCTTGTATTTGTTTTCCATTATTTGTCGCAAAATGTGGAGTGCAAGAAGAATATGCATCTATACTCCAAATTTCAACCATGCCTTTGAGCATTTTTGCATACATTCGGGGGGAAGAGCCATCATTCAAGCTGTGGAAAGAAACTTGAGGCTAAGGAAACAGGACGTGGAGCCATCAACCATGACTCTTTACAGGTTTGGAAACATTTCATCTTCTTCAATTTGGTATGAGCTGAGCTACATAGAAGCAAAAGGGAGGATGAAATGTGGGGATAGAGTGTGGCAAATTGCCTTTGGAAGTGGATTCAAGTGCAACAGTGCAGTGTGGAAATGTCTATGTGACGTGAAGCCAGACACTGCCACTGCATGGAGGGATACAATTCACTCGTACCCTGTGGATATTGTGAGAACAAACTGA 861 0.4228 MRSNIMSFNLSGMGCSAGIISMSLAKDLLRVHRNSLALIVSTETLSLNWYTGKVPSMLLSNCLFRMGGAAILMSSRVQDKHKAKYKLEHIVRTITAQDDQSHGCVYQQVDPENKEGISISKNIVKVSGDALKKNIASLGPLVLPLREQFLYLFSIICRKMWSARRICIYTPNFNHAFEHFCIHSGGRAIIQAVERNLRLRKQDVEPSTMTLYRFGNISSSSIWYELSYIEAKGRMKCGDRVWQIAFGSGFKCNSAVWKCLCDVKPDTATAWRDTIHSYPVDIVRTN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01377 286 CDD CHS_like 1 257 - -
Pumo2g01377 286 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Pumo2g01377 286 PANTHER 3-KETOACYL-COA SYNTHASE 1 281 IPR012392 GO:0006633|GO:0016020|GO:0016747
Pumo2g01377 286 Pfam FAE1/Type III polyketide synthase-like protein 1 160 IPR013601 GO:0006633|GO:0016020|GO:0016747
Pumo2g01377 286 SUPERFAMILY Thiolase-like 88 259 IPR016039 GO:0016746
Pumo2g01377 286 Gene3D - 1 258 IPR016039 GO:0016746
Pumo2g01377 286 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 177 258 IPR013747 -
Pumo2g01377 286 SUPERFAMILY Thiolase-like 1 76 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01377 Pumo-Chr2 20531923 20532911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01377 1 280 Acyl Lipid Metabolism Gene Families AT1G71160 61.071 9.37e-124 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01377 K15397 - gmx:100783404 564.303