Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01374 ATGATAAGGTTACGACATGGAGCTAACAAGTTTGGTTGTTTTGGTAAATCATGGACCAACATTCATCCTTCCTTCCATTCCCTCTCATCTCCGTTTCACTATTCATTTCCAGCTACAGATCCCACTGTACTCCACCGAGTTCTTGAACGCTGTAGAGTTTCCATGGATCTCAGAACCGCCACTAAAACCCACGCAAGAGTTGTTGTACTTGGCTTTGCCACTTACCCTTCTTTTGTGGCGTCTCTCATATCAACTTATGCTCAATGCCACCAACCCCACATTGCCCTTCACGTTTTCTCCATTGTTTTGGACCTATTCAGCATGAATATGGTGATTGAAAGTTTGATGAAAAGTGGGCAATGTGACATTGCCAAGAAGGTGTTTGGCAAAATGCCTGTTAGAGATGTGGTCACGTGGAACTCCGTGATTGGAGGTTACGTCAAAAACTCGCGCTTCTACGATGCGTTGAGCCTTTTCCGGAGAATGCTGAGTGCCAAGGTAGAGCCTGATGGGTTCACCTTTGCTTCTGTGGTTACCGCGTGTGCACGCCTTGGGGCTCTTGGCAATGCCAAGTGGGTGCATGGTTTGATGGTTGAGAAAAGGGTTGAGCTGAATTATATATTGAGTGCTGCGTTGATTGACATGTATGCGAAGTGTGGTAGGATTGATGTTTCAAGGCAGGTTTTTGAGGAGGTTGCACGTGATCATGTGTCTGTTTGGAATGCTATGATTAGTGGGTTGGCAATTCATGGACTTGCAATGGATGCGACTGTGGTGTTTTCAAGGATGGAGATGGAGTGTGTTTTGCCGGATTCTGTTACTTTTATTGGGATTTTGACTGCATGTAGTCACTGTGGATTGGTTGAAGATGGTCGCAAGTATTTTGATATGATGCAGAACCATTTCATGATTCAGCCACAGCTCGAGCATTATGGAACCATGGTTGATCTCTTGGGACGAGCAGGGCTCATGGAAGAGGCCTATCGTGTGATTAAGGTGATGCCTATGGAGCCTGATGTTGTTATCTGGAGAGCACTTTTGAGTGCTTGTAGAATCTACAGAAACAAAGAACTTGGTGAAGTTGCCATTGCAAACATATCTCGCTTAGAGAGTGGAGACTTTGTGTTGTTGTCAAATATGTATTGCTCTTTAAAGAACTGGGATAGTGCTGAGAGAGTGAGACAGGTGATGAAAATGGGAGGGGTTAGGAAAAACCGTGGTAAGAGTTGGATTGAATTGGGGGACTGCATTCACCTATTCAATGCAGCTGATCAATCACATGCTGAAATGAAATCCATTTACAGAGTGCTGGAAGGTTTGATCCAAAGAGCTAAGTTGGAGGGATTCACACCCTTGACGGATCTGGTTTTAATGGATGTCTCTGAAGAGGAAAAAGAAGAAAATTTAACATTTCATAGCGAGAAGTTGGCCTTGGCTTATGCGGTCCTGAAAACTAGCCCTGGAACAAAAATCAGGATTTCCAAAAACCTGCGTATCTGTCTAGACTGTCATAATTGGATTAAAATTGTGTCAAAAATATTAAACAGAGAGATAATCGTGAGGGATCGGATCCGTTTTCACCAATTTGAAGGTGGTGTTTGCTCTTGCAGAGACTACTGGTAG 1623 0.4387 MIRLRHGANKFGCFGKSWTNIHPSFHSLSSPFHYSFPATDPTVLHRVLERCRVSMDLRTATKTHARVVVLGFATYPSFVASLISTYAQCHQPHIALHVFSIVLDLFSMNMVIESLMKSGQCDIAKKVFGKMPVRDVVTWNSVIGGYVKNSRFYDALSLFRRMLSAKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATVVFSRMEMECVLPDSVTFIGILTACSHCGLVEDGRKYFDMMQNHFMIQPQLEHYGTMVDLLGRAGLMEEAYRVIKVMPMEPDVVIWRALLSACRIYRNKELGEVAIANISRLESGDFVLLSNMYCSLKNWDSAERVRQVMKMGGVRKNRGKSWIELGDCIHLFNAADQSHAEMKSIYRVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLTFHSEKLALAYAVLKTSPGTKIRISKNLRICLDCHNWIKIVSKILNREIIVRDRIRFHQFEGGVCSCRDYW 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01374 540 Pfam PPR repeat family 134 183 IPR002885 -
Pumo2g01374 540 NCBIfam pentatricopeptide repeat 137 170 IPR002885 -
Pumo2g01374 540 Gene3D Tetratricopeptide repeat domain 58 191 IPR011990 GO:0005515
Pumo2g01374 540 FunFam Pentatricopeptide repeat-containing protein 208 431 - -
Pumo2g01374 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Pumo2g01374 540 Pfam E motif 353 412 IPR046848 -
Pumo2g01374 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Pumo2g01374 540 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 477 IPR046960 GO:0003723|GO:0009451
Pumo2g01374 540 Pfam PPR repeat 239 266 IPR002885 -
Pumo2g01374 540 Pfam PPR repeat 273 300 IPR002885 -
Pumo2g01374 540 Pfam PPR repeat 211 234 IPR002885 -
Pumo2g01374 540 Pfam PPR repeat 310 335 IPR002885 -
Pumo2g01374 540 FunFam Pentatricopeptide repeat-containing protein 42 191 - -
Pumo2g01374 540 Gene3D Tetratricopeptide repeat domain 211 432 IPR011990 GO:0005515
Pumo2g01374 540 Pfam DYW family of nucleic acid deaminases 448 540 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01374 Pumo-Chr2 20527535 20529277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01374 109 540 Glycoside Hydrolase AT3G49170 39.180 1.62e-105 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01374 - - gmx:100788229 978.778