Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01342 ATGTCATCTTTGGGTAGGGAACTGGTGTTCCTCATTCTTCAATTTCTCGATGAAGAGAAATTCAGAGATACTGTGCACAAGTTGGAGCAAGAATCGGGTTTGTTCTTCAATGTGAAGTATTTTGAAGAGAAAGTCCTGGCTGGAGAGTGGGACGATGTTGAGAAATACCTCTCTGGATTTACCAAAGTTGATGACAATCGGTACTCTATGAAGATTTTCTTTGAGATTAGGAAGCAGAAGTATCTTGAAGCCTTGGACAGGAATGACAAAGCGAGAGCTGTTGAAATTCTGGTGAATGATTTGAAAGCTTTTTCATCTTTTAACGAAGATTTGTTCAAAGAGATAACACATCTTCTAACCCTTAACAATTTCAGGGAAAATGAACAGTTATCAAAGTATGGTGATACTAAATCAGCTCGAAATATAATGCTGGTAGAGCTTAAGAAATTGATTGAAGCAAATCCCCTCTTTCGAGATAAGCTTGTATGTCCTTCATTTAAGACATCACGGCTACGAACCTTGGTTAATCAAAGTTTGAACTGGCAGCATCAGCTGTGCAAGAACCCAAGGCCAAATCCAGACATTAAAACTTTATTTACTGACCATTCTTGTTCACCTACAAATGGATCTCGTGCACCTACCCCTGTCAACTTTCCTGTAGCAGCTGTTGCCAAGCCTTCATCTTATGTTCCACTTGGAGCACATATTGGGCCATTTACACCAGCCCCAGCTGCTTCTAATGTTAATGCTTTAGCGGGATGGATGATGAATGGGAATCCTTCCACATCTTCTCAATCACCTGTAGTTGCTGCTTCCTCATTGTCTGGTCCTCCAAATCAAGTCCCCGTTTTGAAGCATCCAAGAACACATAATGCTCTTGGAATGATGGATTATCAAAACAATGATCATGAGCAACTAATGAAACGATTGCGAACTGCACAATCTGCTGACGAGGTTACATATCCTGCTCCACCTCAACAAGCCTCTTACTTGTTTGATGACCTTCCTAGAACTGTTGTTTGTACATTACATCAGGGATCAACAGTAACAAGCATGGATTTTCATCCTTCCCTTCATTCATTACTTGCCGTTGGTTGCACAAATGGTGAAATTTCACTTTGGGAAACAGGGCACAGAGAGAGGCTTATATCAAAGCCTTTCAAAATATGGAATACTTCTGCTTGTTCTGTCTTATTTCAGGCTGCAATGCTGAAAGACTCGTCTATATCCGTTAGTCGTGTATCATGGAATGCAGATGGGAATTTTATTGGGGTTGCTTTTACAAAACATTTGATTCAATTGTATGCCTATCAAGCACCTAATGATCTACAGCAGCGTTTAGAGATTGATGCTCATATTGGTGGTGTTAATGACTTGGCATTTTCTAATCCAAACAAACAGCTATGCATTGTAACTTGTGGAGATGATAAGTTAATAAAGGTATGGGATTTGACTGGAAAGAAGCTCTTTAACTTTGAAGGTCATGGAGCACCTGTTTATTCTATTTGTCCTCATCAGAAGGAAAATATCCAGTTTATATTTTCAACTTCTGTTGATGGGAAAATCAAGGCCTGGTTATATGATGACTTGGGCTCCAGGGTGGACTATGATGCTCCTGGACAGTGGTGCACCACAATGCTCTATAGTGCTGACGGTAGTAGATTGTTCTCTTGTGGGACAAGTAAAGATGGAGATTCTTTCCTAGTTGAGTGGAATGAAAGTGAAGGGGCACTAAAAAGAACATATTCTGGGTTTAGAAAGAAATCTGCTGGCATTGTGCAATTTGACACAACAAAAGGTCGCTTTTTGGCTGCTGGTGAAGATAACCAGATTAAGTTTTGGGATATGGATAATGTCAATGTTCTGATTAGTACAGATGCTGAGGGCGGTCTTCCTAGTCTCCCTCGCTTGAGGTTCAATAAAGAAGGAAATCTGCTTGCTGTTACTACAGCAGATGGTGGTTTGAAAATCCTTGCTAATTCTGATGGCATCAAATACTTGAGGGCCATTGAAGCTCGGTCTTATGAAGCATCTAAAGCTCCTTTTGAGACAAAGGTACCTAGCTCTTCTGTGGTTGCAAATATCAGTCCACTCATCAATAAAATGGAGCATATGGACAGAAGCTCTCCTGCTGGACTGGCACCTAGCCTTAATGGAGTTGATTCTATGCCTAGATGCATAGAGAGGAAAAGAAGTTTGGATGATGTATCTGACAAATCTAAAGCTTGGGAATTTACAGAAATAGTTGATCCCATTCAGTGTCGAACAGTTACTATGCCAGATAATATGGATCCCACTAACAAGGTTGCTCGTCTTCTTTACACAAATTCTGGGGTTGGTCTTCTTGCTCTTGGCTCGAAAGGGATTCAGAGGCTGTGGAAATGGAGCCGTAATGAACTGAATCCTAGTGGAAAGGCCACGGCAAGTGTTGTTCCACACCATTGGCAACCAAATAGTGGTCTTCTCATGAATAATGATGTCCCAGACAATTCTGAAGCAGCAGTTCCATGCATAGCACTCTCAAAGAATGATTCTTATGTTATGTCTGCATGTGGAGGAAAAATTTCATTGTTCAACATGATGACATTTAAGGTGATGGCAACTTTTATGCAACCTCCCCCTATTTCAACCTTCCTTGCATTTCACCCTCAAGATAATAATATTGTTGCAATTGGAATGGAAGATTCAACAATTCATATTTACAATGTTAGGGTAGATGAGGTCAAATCTAAATTGAGGGGTCATCAGAAGCACGTTACCGGTTTAGCTTTTTCAGCCCAACTGAATATCTTGGTTTCATCAGGTGCTGATGGTCAGCTTCTGTTTTGGAGCATTGACTCATGGGATAAGAAGAAATCACTATCGATCCAAATGCCAGGTAGAAATGTAGCTGTTGGTGATACTCGAGTGCAATTCCACATTGATCAAGTAAATTTGCTGGTATGCCATGAGACGCAACTAGCAATATATGATGCTTCAAAAATGGAATTGATTCGCCAGTGGGTGCCACAAGATGGGTTGTTTGGTTCCATATCCTCTGCAACATATTCCTGCAATAGCCAACTAGTTTATGCTACTTTCACTGATGGAAATATTGGAGTATTTGATGCTGATACCCTCAGACTAAGATGTCGTATAGCTTCATCAGCATACCTACATCAGACCACATTAAACAGCCAAAATGTGCACCCTATTGTTGTCACAGCACATCCTCAGGATCCCAATCAATTTGCAATTGGACTGTCTGATGGCTCAATCAAAGTTATTGAGCCTAGAGAGTGTGATGGGAGGTGGGGGATTAAAGCACATGTTGATGGTGCAATGCAGAATGGTAGGACAGCGTCACCCTCAACCACAAAATAA 3363 0.4086 MSSLGRELVFLILQFLDEEKFRDTVHKLEQESGLFFNVKYFEEKVLAGEWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRNDKARAVEILVNDLKAFSSFNEDLFKEITHLLTLNNFRENEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLVCPSFKTSRLRTLVNQSLNWQHQLCKNPRPNPDIKTLFTDHSCSPTNGSRAPTPVNFPVAAVAKPSSYVPLGAHIGPFTPAPAASNVNALAGWMMNGNPSTSSQSPVVAASSLSGPPNQVPVLKHPRTHNALGMMDYQNNDHEQLMKRLRTAQSADEVTYPAPPQQASYLFDDLPRTVVCTLHQGSTVTSMDFHPSLHSLLAVGCTNGEISLWETGHRERLISKPFKIWNTSACSVLFQAAMLKDSSISVSRVSWNADGNFIGVAFTKHLIQLYAYQAPNDLQQRLEIDAHIGGVNDLAFSNPNKQLCIVTCGDDKLIKVWDLTGKKLFNFEGHGAPVYSICPHQKENIQFIFSTSVDGKIKAWLYDDLGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGALKRTYSGFRKKSAGIVQFDTTKGRFLAAGEDNQIKFWDMDNVNVLISTDAEGGLPSLPRLRFNKEGNLLAVTTADGGLKILANSDGIKYLRAIEARSYEASKAPFETKVPSSSVVANISPLINKMEHMDRSSPAGLAPSLNGVDSMPRCIERKRSLDDVSDKSKAWEFTEIVDPIQCRTVTMPDNMDPTNKVARLLYTNSGVGLLALGSKGIQRLWKWSRNELNPSGKATASVVPHHWQPNSGLLMNNDVPDNSEAAVPCIALSKNDSYVMSACGGKISLFNMMTFKVMATFMQPPPISTFLAFHPQDNNIVAIGMEDSTIHIYNVRVDEVKSKLRGHQKHVTGLAFSAQLNILVSSGADGQLLFWSIDSWDKKKSLSIQMPGRNVAVGDTRVQFHIDQVNLLVCHETQLAIYDASKMELIRQWVPQDGLFGSISSATYSCNSQLVYATFTDGNIGVFDADTLRLRCRIASSAYLHQTTLNSQNVHPIVVTAHPQDPNQFAIGLSDGSIKVIEPRECDGRWGIKAHVDGAMQNGRTASPSTTK 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01342 1120 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Pumo2g01342 1120 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 337 488 IPR011044 -
Pumo2g01342 1120 MobiDBLite consensus disorder prediction 261 279 - -
Pumo2g01342 1120 FunFam TOPLESS-related 3 403 696 - -
Pumo2g01342 1120 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1106 IPR027728 GO:0006355
Pumo2g01342 1120 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pumo2g01342 1120 SMART Lish 4 36 IPR006594 GO:0005515
Pumo2g01342 1120 Gene3D - 986 1112 IPR015943 GO:0005515
Pumo2g01342 1120 SMART WD40_4 862 902 IPR001680 GO:0005515
Pumo2g01342 1120 SMART WD40_4 529 572 IPR001680 GO:0005515
Pumo2g01342 1120 SMART WD40_4 994 1036 IPR001680 GO:0005515
Pumo2g01342 1120 SMART WD40_4 485 526 IPR001680 GO:0005515
Pumo2g01342 1120 SMART WD40_4 336 375 IPR001680 GO:0005515
Pumo2g01342 1120 SMART WD40_4 818 859 IPR001680 GO:0005515
Pumo2g01342 1120 SMART WD40_4 575 615 IPR001680 GO:0005515
Pumo2g01342 1120 SMART WD40_4 905 944 IPR001680 GO:0005515
Pumo2g01342 1120 SMART WD40_4 442 483 IPR001680 GO:0005515
Pumo2g01342 1120 SMART WD40_4 397 436 IPR001680 GO:0005515
Pumo2g01342 1120 SMART WD40_4 1050 1090 IPR001680 GO:0005515
Pumo2g01342 1120 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 913 1093 - -
Pumo2g01342 1120 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 484 IPR001680 GO:0005515
Pumo2g01342 1120 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Pumo2g01342 1120 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Pumo2g01342 1120 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Pumo2g01342 1120 Gene3D - 541 674 IPR015943 GO:0005515
Pumo2g01342 1120 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Pumo2g01342 1120 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Pumo2g01342 1120 Gene3D - 288 539 IPR015943 GO:0005515
Pumo2g01342 1120 SMART ctlh 34 92 IPR006595 -
Pumo2g01342 1120 MobiDBLite consensus disorder prediction 261 283 - -
Pumo2g01342 1120 Gene3D - 734 985 IPR015943 GO:0005515
Pumo2g01342 1120 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 453 949 IPR011047 -
Pumo2g01342 1120 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01342 Pumo-Chr2 19559632 19569065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01342 448 657 Miscellaneous Gene Families AT5G08390 24.413 9.78e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01342 - - tpra:123882083 1787.7