Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01337 ATGGCGGTCCTCACTTTCACAGAGGAGTTTACTAGCACTGTCCAGCCAGGAAGGTTGTTCAAGGCTTTGGTCCTTGATGCTCCAAACCTCATCCCCAAGCTGATGCCTGAGGCCATTAAGAATGTTCAACTGGTTGAAGGGAGTGGAGGCTCTGGAAGCATTCAGGAGATAACCATTGTTGAAGGTGGTAACATCAAACACTTGAAGCATAGAATTGATGCAATAGACCAAGAGAAATTGACTTACAGCTACTCAGTGATTGAGGGGGATGGTGCACTGGAAAAAGTGGATTCAATTTCCCATGAGATCAAGTTCGAGGCCACTGAAGAGGGAGGTTGCAAGACCAAGACTGTCAGCAAGTATCATCCCAAAGAAGGGGTTGTTGTTAAAGAGGAGGATTTCAAGGCTGCAAGGGAGGAAGGTTTGGCTCTCCTCAAGGTCGTGGATGCATATCTTGTGGCAAACCCTGAGGCCTATGCTGAAGGAAATATATATAGCGAGGAGTTTACTAGCACTGTCCAGCCAGGAAGGTTGTTCAAGGCTTTGGTCCTTGATGCTCCGAACCTCATCCCCAAGCTGATGCCTGAGGCTATTAAGATTCAACTGGTTGAAGGGAATGGAGGCCCTGGAAGCATTCAGGAGATAACCATTGTTGAAGGTGATAACATCAAACGCTTGAAGCATAGAATTGATGCAATAGACCAAGAGAAATTGACATACAGCTACTCAGTGATTGAGGGGGATGGTGCACTGGAAAAAGTGGATTCAATTGCTCATGAGATTAAGTTCGAGGTCCACTGA 801 0.4632 MAVLTFTEEFTSTVQPGRLFKALVLDAPNLIPKLMPEAIKNVQLVEGSGGSGSIQEITIVEGGNIKHLKHRIDAIDQEKLTYSYSVIEGDGALEKVDSISHEIKFEATEEGGCKTKTVSKYHPKEGVVVKEEDFKAAREEGLALLKVVDAYLVANPEAYAEGNIYSEEFTSTVQPGRLFKALVLDAPNLIPKLMPEAIKIQLVEGNGGPGSIQEITIVEGDNIKRLKHRIDAIDQEKLTYSYSVIEGDGALEKVDSIAHEIKFEVH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01337 266 SUPERFAMILY Bet v1-like 4 159 - -
Pumo2g01337 266 FunFam Major pollen allergen Bet v 1-A 1 159 - -
Pumo2g01337 266 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pumo2g01337 266 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pumo2g01337 266 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pumo2g01337 266 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pumo2g01337 266 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pumo2g01337 266 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pumo2g01337 266 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pumo2g01337 266 CDD Bet_v1-like 5 152 - -
Pumo2g01337 266 Pfam Pathogenesis-related protein Bet v 1 family 2 154 IPR000916 GO:0006952
Pumo2g01337 266 Pfam Pathogenesis-related protein Bet v 1 family 165 248 IPR000916 GO:0006952
Pumo2g01337 266 Gene3D - 164 266 IPR023393 -
Pumo2g01337 266 Gene3D - 2 158 IPR023393 -
Pumo2g01337 266 PANTHER - 1 159 - -
Pumo2g01337 266 FunFam Major pollen allergen Bet v 1-A 160 266 - -
Pumo2g01337 266 CDD Bet_v1-like 165 264 - -
Pumo2g01337 266 SUPERFAMILY Bet v1-like 165 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01337 Pumo-Chr2 19516233 19519315 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01337 - - gmx:100306381 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01337 2 19516233 19519315 Pumo2g01337 2 19516233 19519315 ECH