Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01316 ATGCCTTGTCAAAATGACAACAAAGGCCTAATACTTGCCCTTGGGCTAGTGCTTTGTGTCACCCTGACCTTCTTCCCAAGGGTCACCGAAGGGAGGGTGCCCTTTGCATGCGACCCTAGGAACGGCCTCACGAGGGGGTTCAAGTTTTGCAACACGCACGTGCCAATCCACGTGCGGGTGCAGGACCTCATTGCGAGGCTCACATTGCCTGAGAAGATTAGGCTCGTGGTCAACAATGCCATCGCCGTGCCCAGGCTCGGCATCCAAGGCTACGAGTGGTGGTCAGAGGCGCTTCACGGCGTGTCCAATGTGGGGCCCGGCACCAAGTTCGGTGGGGCCTTCCCTGGCGCCACCATGTTCCCTCAGGTCATCACAACCGCTGCTTCCTTCAATCAATCGCTGTGGCAGGAAATTGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGCTTAACGTATTGGAGTCCTAATGTGAACATTTTCCGTGACCCACGGTGGGGCCGTGGCCAAGAGACTCCCGGCGAGGACCCAACATTGGCCGCGAAATACGCCGCCAGCTATGTCAAAGGACTCCAAGGCAACGGTGCCGGAAATCGTCTCAAGGTTGCTGCTTGTTGTAAACACTACACTGCCTATGATCTTGATAACTGGAATGGTGTGGACAGGTTTCATTTCAACGCCAAGGTGAGTAAACAAGATTTGGAAGACACTTATGATGTACCATTTAAAGCGTGCGTGTTGGAAGGACAAGTGGCGAGTGTGATGTGTTCCTACAATCAGGTGAATGGCAAGCCCACGTGTGCTGACCCTGATCTCCTTCGCAACACTATCCGTGGCCAATGGCGTCTCAATGGGTACATTGTCTCGGACTGTGATTCACTTGGAGTTTTCTTTGACAACCAACACTACACAAGAACACCTGAGGAGGCAGCTGCGGAGGCCATTAAAGCGGGCCTGGACTTGGATTGTGGCCCATTCTTGGCAATCCACACCGATTCTGCCATTAGGAAGGGACTCATTTCCGAAAACGATCTTAACCTTGCCTTGGCCAACCTTATTACGGTCCAAATGAGATTGGGTATGTTCGACGGCGAACCCTCGGCCCAACCATACGGAAACTTGGGCCCAAGAGATGTGTGCACCCCGGCCCATCAACAACTGGCCCTTGAAGCAGCTAGAGAGAGCATAGTCTTGCTACAAAACAAAGGAAACTCCCTGCCACTATCCCCTGCGCGACTCCGTACCGTAGGAGTCATTGGACCCAATGCGGACGCTACCGCTACAATGATAGGAAACTATGCTGGTGTGGCATGTGGTTATACCACACCTTTGCAAGGGATTGCGAGGTATGTGAAGACCGCTCATCAAATTGGATGTAGGGGTGTGGCTTGTAGAGGAAATGAACTATTTAGGGCCGCAGAGACCATAGCTAGGCAAGTTGATGCGACTGTTTTAGTAATGGGCCTTGACCAGACCATAGAAGCGGAAACGAGAGACAGAGTTGGGCTGCTCTTACCAGGCCTCCAACAAGAGCTTGTGACTAGGGTGGCCAGGGCCGCAAGGGGCCCAGTTATCTTGGTCATCATGTCTGGTGGCCCAGTTGATGTCTCCTTTGCCAAAAATGACCCCAAGATTAGTGCCATTTTGTGGGTTGGTTATCCTGGCCAGGCTGGTGGAACTGCCATAGCTGATGTGATCTTTGGTACAACTAACCCAGGAGGAAGGTTACCCATGACATGGTACCCACAGGGGTATTTGGCTAAAGTGCCCATGACAATCATGGACATGCGTCCAAACCCAGCAACAGGGTACCCAGGAAGAACCTACAGATTCTACAAAGGTCCAGTAGTGTTCCCATTCGGACACGGACTAAGTTACTCAAGATTCACCCACACCTTAGCACTTGCACCGAAACAGGTGTCAGTGCCCATAGTGAGCCTCCAAGCCTTGACAAACTCAACCCTCTCAAGCAAAGCAGTGAAGGTGAGTCATGCCAATTGTGACGATGATTCATTGGAGATGGAGTTCCACGTTGACGTGAAAAACGAAGGCTCAATGGATGGGACCCACACCCTTCTCATATTCTCACAACCACCCCACGGTAATTGGTCACCAATTAAACAATTGGTGATCTTCCACAAGACCCGTGTTCCCGCTGGCTCGAAGCAACGAGTCAAGGTTGGTGTTCACGCGTGCAAACACTTATCCGTTGTGGACCCGTTTGGGGTTCGAAGAATCCCAACCGGTGAACATGAGCTCCACATTGGTGATCTCAAACATTCAATTTCTGTCCAAACTATGCATTAA 2325 0.5174 MPCQNDNKGLILALGLVLCVTLTFFPRVTEGRVPFACDPRNGLTRGFKFCNTHVPIHVRVQDLIARLTLPEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPGATMFPQVITTAASFNQSLWQEIGRVVSDEARAMYNGGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVKGLQGNGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLEDTYDVPFKACVLEGQVASVMCSYNQVNGKPTCADPDLLRNTIRGQWRLNGYIVSDCDSLGVFFDNQHYTRTPEEAAAEAIKAGLDLDCGPFLAIHTDSAIRKGLISENDLNLALANLITVQMRLGMFDGEPSAQPYGNLGPRDVCTPAHQQLALEAARESIVLLQNKGNSLPLSPARLRTVGVIGPNADATATMIGNYAGVACGYTTPLQGIARYVKTAHQIGCRGVACRGNELFRAAETIARQVDATVLVMGLDQTIEAETRDRVGLLLPGLQQELVTRVARAARGPVILVIMSGGPVDVSFAKNDPKISAILWVGYPGQAGGTAIADVIFGTTNPGGRLPMTWYPQGYLAKVPMTIMDMRPNPATGYPGRTYRFYKGPVVFPFGHGLSYSRFTHTLALAPKQVSVPIVSLQALTNSTLSSKAVKVSHANCDDDSLEMEFHVDVKNEGSMDGTHTLLIFSQPPHGNWSPIKQLVIFHKTRVPAGSKQRVKVGVHACKHLSVVDPFGVRRIPTGEHELHIGDLKHSISVQTMH 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01316 774 Pfam Glycosyl hydrolase family 3 C-terminal domain 402 632 IPR002772 GO:0004553|GO:0005975
Pumo2g01316 774 PANTHER SUGAR HYDROLASE-RELATED 32 768 IPR044993 GO:0009044|GO:0045493
Pumo2g01316 774 Gene3D - 59 376 IPR036962 GO:0004553|GO:0005975
Pumo2g01316 774 Gene3D Immunoglobulins 656 774 IPR013783 -
Pumo2g01316 774 FunFam probable beta-D-xylosidase 2 387 633 - -
Pumo2g01316 774 SMART Fn3_like_2 696 765 IPR026891 -
Pumo2g01316 774 Pfam Fibronectin type III-like domain 701 763 IPR026891 -
Pumo2g01316 774 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 402 635 IPR036881 GO:0004553|GO:0005975
Pumo2g01316 774 Gene3D - 388 633 IPR036881 GO:0004553|GO:0005975
Pumo2g01316 774 SUPERFAMILY (Trans)glycosidases 48 401 IPR017853 -
Pumo2g01316 774 Pfam Glycosyl hydrolase family 3 N terminal domain 114 349 IPR001764 GO:0004553|GO:0005975
Pumo2g01316 774 PRINTS Glycosyl hydrolase family 3 signature 208 224 IPR001764 GO:0004553|GO:0005975
Pumo2g01316 774 PRINTS Glycosyl hydrolase family 3 signature 120 139 IPR001764 GO:0004553|GO:0005975
Pumo2g01316 774 PRINTS Glycosyl hydrolase family 3 signature 282 300 IPR001764 GO:0004553|GO:0005975
Pumo2g01316 774 FunFam probable beta-D-xylosidase 7 59 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01316 Pumo-Chr2 19284842 19291280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01316 1 771 Glycoside Hydrolase AT5G49360 72.179 0.0 1137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01316 - - gmx:100805839 1506.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01316 2 19284842 19291280 Pumo2g01316 2 19284842 19291280 ECH