Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01278 ATGGCCGACAAGTACAACCTCAAGAACCCCGCCGTCAAGCGGATCCTCCAGGAGGTTAAGGAGATGCACTCCAACCCTTCCGACGATTTCATGAGCCTCCCTCTCGAGGAAAATATATTTGAGTGGCAATTTGCGATTAGAGGGCCTCGTGATACTGAATTTGAGGGTGGTATTTATCATGGACGGATCCAATTGCCTTCAGAGTATCCATTCAAACCCCCTTCATTCATGTTGTTGACACCTAATGGTCGTTTCGAGACTCAAACCAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTGAGGACTGCTTTAGTTGCACTGATTGCATTCATGCCTACCAACCCAAATGGTGCATTGGGCTCCTTAGACTACAAGAAAGAAGAGAGGCGTACCTTGGCGGTTAAATCTCGTGACGCTCCTCCTAAATTCGGGACTCCTGAACGTCAAAAGCTGATCGATGAGATACACGAGTACATGCTCAGCAAGGCACCCCCTGTTCCTCAACCTAGCGCCACAGAGGCTTCCGAAGAGAACCCCAGAAATGAGGAGGCTGAGGCCGACGTTAATTCACCAAATCCTGAGTCTTTACCTGCAGGAGAGAGGACTCCAGATCAAGAAGGTGATGGTATTGTTGAAGAACAAGAAGAAGTTGTTGCAAATGCTAACCCTGCAGGAGTTGAAGTTCCAAGGGAGGTTCAATCAAGTGTTTCAAGGAATGAGATGCTCCAAAAGTCAGATACAAGAGTTCAGAATCCTAAGCCAGAGACCAGGGTCCAGAAACCTGATGATCGGTTGTTCACATTGGCAGCTATTGGACTCACTATTGCAATTGTGGTCCTTTTGCTCAAAAAGTTCATTAAATCTACCGAACATGGGGCACTTTTCTCCGATGGATCTTAA 927 0.4693 MADKYNLKNPAVKRILQEVKEMHSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAVKSRDAPPKFGTPERQKLIDEIHEYMLSKAPPVPQPSATEASEENPRNEEAEADVNSPNPESLPAGERTPDQEGDGIVEEQEEVVANANPAGVEVPREVQSSVSRNEMLQKSDTRVQNPKPETRVQKPDDRLFTLAAIGLTIAIVVLLLKKFIKSTEHGALFSDGS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01278 308 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Pumo2g01278 308 SUPERFAMILY UBC-like 11 133 IPR016135 -
Pumo2g01278 308 MobiDBLite consensus disorder prediction 171 216 - -
Pumo2g01278 308 FunFam ubiquitin-conjugating enzyme E2 32 1 174 - -
Pumo2g01278 308 MobiDBLite consensus disorder prediction 241 258 - -
Pumo2g01278 308 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Pumo2g01278 308 CDD UBCc 12 127 IPR000608 -
Pumo2g01278 308 MobiDBLite consensus disorder prediction 228 267 - -
Pumo2g01278 308 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 10 132 - -
Pumo2g01278 308 SMART ubc_7 13 173 - -
Pumo2g01278 308 Gene3D Ubiquitin Conjugating Enzyme 2 195 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01278 Pumo-Chr2 18239113 18242269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01278 1 306 Miscellaneous Gene Families AT3G17000 64.516 1.81e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01278 K10578 - gmx:100811370 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01278 2 18239113 18242269 Pumo2g01278 2 18239113 18242269 ECH