Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00843 ATGATTGTTGTTGGCAGAATTATTGGAGTTGTTGGGAGGTCATACTACACGAGCAGGTCGAAGAAACCGAGCCTGTACTCGAAAATCAGCCCCCTCGGAAATCCCAACACTAGTGTGCTACCCGTGCTCGACGATTGGGTGTTCAAGGGGAACAAGCTTCGACTCGCTGAACTTCAACGCATCATTCGTGACCTTCGCAAACGCAGTAGGTTCTCCCAAGCCCTCCAGGTATCTGAGTGGATGTACACGAAAGGTGCGTGCATATTCTCTCCAACAGAACACGCGGTGCATTTGGATCTGATTGGCAAGGTTCATGGATTCTCTTCTGCAGAAAGCTATTTTGATGCCTTGAAGGATCAATACAAAACCGATAAGACCTACGGTGCTCTCTTGAATTGCTATGTTCGCCAGCGCCAAACCGATAAGGCCCTCTCCCATTTGCAGAAAATGAAGGAGTTGGGGTTTGCTTCATCGCCTCTAACTTACAATGACATTATGTGTTTGTATACAAATATTGGACAGCATGAGAAGGTTCCTGACGTGCTACTTGAGATGAAACAAAACCAAGTCTTGCCAGACAACTTCAGCTACAGGATCTGTATAAATTCTTATGGTGTCAGGTCTGATTTTGATGGTGTGGAAAGAGTATTGAAAGAGATGGAGACTCGACCAGACATTGTGATGGACTGGAATACTTATTCTATTGTGGCCAATTTTTATATAAAAGCAGGGCTTACAAGTGAGGCGGTTTGTGCCCTAAAGAAATCTGAGGCGAGGCTAGGTAGCAAAGATGGCCAGGGTTACAATCATCTCATCTCTCTTTATGCCCGTCTTGGACTGAAGAATGAGGTCATGAGAATATGGGATCTGGAGAAAAGTGCTTGCAAGAGGTGCATAAACAGGGATTTCACGACCATGTTAGAATCTCTTGTAAAGCTTGGGGAGCTCGATGAAGCTGAGAAAATACTCAAGGAATGGGAATCCTCTGACAATTGTTATGATTTCGGAATCCCAAGTATTGTAATAATTGGGTATTCACAAAAAGGTTTGCACGAGAAAGCCGAAGCCATGCTTGAAGAGTTACAAAACAAGGAAAAGGTCACCACCCCAAACTGTTGGTCTATAGTGGCAGGTGGATACATTCACAAGGGTGAGATGGAGAAAGCATTGAAGTGCTTTAAAACATCCCTCTCTTTGTACGTGGAAAATAAAGGATGGAAACCTAACGCAAAGGTGATTGCAGAACTATTGCGTTGGATTGGTGAATAA 1269 0.4413 MIVVGRIIGVVGRSYYTSRSKKPSLYSKISPLGNPNTSVLPVLDDWVFKGNKLRLAELQRIIRDLRKRSRFSQALQVSEWMYTKGACIFSPTEHAVHLDLIGKVHGFSSAESYFDALKDQYKTDKTYGALLNCYVRQRQTDKALSHLQKMKELGFASSPLTYNDIMCLYTNIGQHEKVPDVLLEMKQNQVLPDNFSYRICINSYGVRSDFDGVERVLKEMETRPDIVMDWNTYSIVANFYIKAGLTSEAVCALKKSEARLGSKDGQGYNHLISLYARLGLKNEVMRIWDLEKSACKRCINRDFTTMLESLVKLGELDEAEKILKEWESSDNCYDFGIPSIVIIGYSQKGLHEKAEAMLEELQNKEKVTTPNCWSIVAGGYIHKGEMEKALKCFKTSLSLYVENKGWKPNAKVIAELLRWIGE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00843 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Pumo2g00843 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Pumo2g00843 422 Gene3D Tetratricopeptide repeat domain 293 421 IPR011990 GO:0005515
Pumo2g00843 422 Gene3D Tetratricopeptide repeat domain 207 292 IPR011990 GO:0005515
Pumo2g00843 422 Gene3D Tetratricopeptide repeat domain 34 206 IPR011990 GO:0005515
Pumo2g00843 422 SUPERFAMILY TPR-like 307 404 IPR011990 GO:0005515
Pumo2g00843 422 PANTHER OS12G0527900 PROTEIN 20 421 - -
Pumo2g00843 422 FunFam Pentatricopeptide repeat-containing protein At4g21705, mitochondrial 294 400 - -
Pumo2g00843 422 SUPERFAMILY TPR-like 115 397 IPR011990 GO:0005515
Pumo2g00843 422 FunFam Pentatricopeptide repeat-containing protein mitochondrial 55 266 - -
Pumo2g00843 422 NCBIfam pentatricopeptide repeat 303 331 IPR002885 -
Pumo2g00843 422 NCBIfam pentatricopeptide repeat 126 155 IPR002885 -
Pumo2g00843 422 NCBIfam pentatricopeptide repeat 195 229 IPR002885 -
Pumo2g00843 422 Pfam PPR repeat 126 155 IPR002885 -
Pumo2g00843 422 Pfam PPR repeat 195 222 IPR002885 -
Pumo2g00843 422 Pfam PPR repeat 268 289 IPR002885 -
Pumo2g00843 422 Pfam PPR repeat 303 329 IPR002885 -
Pumo2g00843 422 Pfam PPR repeat 340 364 IPR002885 -
Pumo2g00843 422 Pfam PPR repeat 372 394 IPR002885 -
Pumo2g00843 422 Pfam PPR repeat 161 189 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00843 Pumo-Chr2 12924424 12926854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00843 24 418 EF-hand Containing Proteins AT1G02150 34.091 1.18e-78 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00843 - - gmx:100805658 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00843 2 12924424 12926854 Pumo2g00843 2 12924424 12926854 ECH