Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00929 ATGAGTACATATGGAACGGAAATTGGCATTAATGTGGATCAGGTCTCGTTGTTCCGAAGGCGCGTATTGCAAGGGAGATGGGACGAGTACGTTATTCCAGCATACATAAATAACACTGAGTTCCACAAAACAAACATCAACCAGAGCAGAGGCACTGCACTACATGTGGCAGTGAATGATGGACTACTGGATCTTGTTAACAATCTTGTAATTGCAATCTTACAGCACGAAGGGACGGGGGTGCTGAGGGATGATAGTGCACTGAAATCAACCAATGAGAGAGGGGACACACCTTTGCACCTTGCAGCCTCAAGAGGGTTCATTGATATGTGTAGATGCATCATAGGGGAAAATGGGGAAAGGAAGGATTTGATTAATGTAAAGAACAACAAGGGTGAGACACCTCTCTTCAGGGCTGTGCTCACATACCACAAAAAGACCTTTGTGTACCTCCATCATCAGTATGATACCAAAGATGTTTCACTACTTACAAACAATGATGGTGATACCATCCTTCACCGTGCCATTTGGAGAGAATTATTCGGTATACTCGTAGGACCTCTTAACGCTGAAAAAGCAATAAAATCATATAAGGCGAGAAGTGATAAATCTGGGTACCGCGAACACAAAGTCCCAATACATTTTGAAAATGAAGCCAAAGTACATAGTTTTCGAAGAACACATTCTTTTGTTGAACAAAAGTATGCCACTTCTGTTCAGTTTGCAGAGAGCATTGTTCGATTAGCATTCAAAGGCCTTAGCCTCTCAAGATTGGGTGTCACTGCACGGGGAAATACTGAGGATGAACCATCTGAGAAATATGATGGAAAAGACATACACTTGGCTCAATCCTTTGTTACCCAACAACAGTTACAAAGTGCCAAAGAAGAATGTTCAAAGGTGGCAGCAGATTGCTCATCAGGGAAGAAGCCAAAAAAAGAACATGATGTTAACAAAAAGGAGACTGCATTTTTGGCAGCAGCGAGAAATGGCATTGTGGAAATTGTGTTTGAACTTCAAAAAGAAATACCAAGTACCATACATGAAACTAACTATAACAATGAAAACGTATTACTTGTGGCAGTGAAGAATAGGCAAACCGAGGTTATTGAGGTGTTGCAGAAGAATTTGGATAAAGAACTCTTTGATAGCCTAATTTTTGAAGTGGATAACATGGAGAACACTGTGTTACACTTAGCGGCAGGTATAACAAGCAAGAGGGAAAGGACTTGGCAAATAGCTGGTAGTGCCATGCAAATGATGTGGGATATAAAGTGGTATGAGTACATCAGAGATCTAGTGCCGGATCATTTCTCTTTTATAAACAACAAGAAGGATGAAACCCCATGGGAAATCTTCGAGCAAAATCACAAGGAACTGGTGAAAGAGAGTTCGGAGTGGCTAAAGGAAACATCAAATTCATGCTCAGTTGTGGCAGCTCTCATTGCCAGCGTTTCCTTTGCGACATCAAGCACTGTCCCTGGCGGCACAGATAAGGGTAAGCCTACGTTGGAAGGGCAACCCGCATTTGATGCATTTGCCATTGCTTCGCTAATTGGACTCAGCTTCTCCGTCACGGCACTCACAATGTTCCTTGCCATACTCACTTCTCGAAAACAAGTCCAAGACTTCCGCAAGAGCTTGCCATTGAAGCTTCTTTTTGGCCTAACTTCTCTCTTTGTGTCCATTGGTTCAATGCTGGTTTCTTTTTGCTCAGCTCATTTCTTTGTGCTTAAGGACAAGTACAAGAACATTTTGTTCCCCTTTTATGGGGCCACTTGCTTGCCTGTCACCTTTTATGCAGTGATGCAGTTTCCATTGTACTTTGATCTACTTAAAGCTATTTTCAAGAAGGTGCCACAACGCGCCAAGAGATGA 1878 0.4233 MSTYGTEIGINVDQVSLFRRRVLQGRWDEYVIPAYINNTEFHKTNINQSRGTALHVAVNDGLLDLVNNLVIAILQHEGTGVLRDDSALKSTNERGDTPLHLAASRGFIDMCRCIIGENGERKDLINVKNNKGETPLFRAVLTYHKKTFVYLHHQYDTKDVSLLTNNDGDTILHRAIWRELFGILVGPLNAEKAIKSYKARSDKSGYREHKVPIHFENEAKVHSFRRTHSFVEQKYATSVQFAESIVRLAFKGLSLSRLGVTARGNTEDEPSEKYDGKDIHLAQSFVTQQQLQSAKEECSKVAADCSSGKKPKKEHDVNKKETAFLAAARNGIVEIVFELQKEIPSTIHETNYNNENVLLVAVKNRQTEVIEVLQKNLDKELFDSLIFEVDNMENTVLHLAAGITSKRERTWQIAGSAMQMMWDIKWYEYIRDLVPDHFSFINNKKDETPWEIFEQNHKELVKESSEWLKETSNSCSVVAALIASVSFATSSTVPGGTDKGKPTLEGQPAFDAFAIASLIGLSFSVTALTMFLAILTSRKQVQDFRKSLPLKLLFGLTSLFVSIGSMLVSFCSAHFFVLKDKYKNILFPFYGATCLPVTFYAVMQFPLYFDLLKAIFKKVPQRAKR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00929 625 Pfam Ankyrin repeats (3 copies) 54 152 IPR002110 GO:0005515
Pumo1g00929 625 Pfam Domain of unknown function 466 576 IPR026961 -
Pumo1g00929 625 SUPERFAMILY Ankyrin repeat 319 402 IPR036770 -
Pumo1g00929 625 Gene3D - 262 479 IPR036770 -
Pumo1g00929 625 SMART ANK_2a 49 78 IPR002110 GO:0005515
Pumo1g00929 625 SMART ANK_2a 319 349 IPR002110 GO:0005515
Pumo1g00929 625 SMART ANK_2a 131 160 IPR002110 GO:0005515
Pumo1g00929 625 SMART ANK_2a 353 383 IPR002110 GO:0005515
Pumo1g00929 625 SMART ANK_2a 94 123 IPR002110 GO:0005515
Pumo1g00929 625 Gene3D - 27 204 IPR036770 -
Pumo1g00929 625 PANTHER CASKIN 47 617 - -
Pumo1g00929 625 SUPERFAMILY Ankyrin repeat 41 184 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00929 Pumo-Chr1 14086770 14093896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00929 451 573 Miscellaneous Gene Families AT1G34050 33.077 1.26e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00929 - - gmx:100813582 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00929 1 14086770 14093896 Pumo1g00929 1 14086770 14093896 ECH