Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00909 ATGAGCGTGGTGGGGTTTGACATTGGTAATGAGAACTGTGTCATTGCTGTAGTTAGGCAACGTGGGATTGATGTTTTGTTGAATTATGAATCCAAACGCGAAACCCCGGCTGTGGTCTGCTTCAGCGAGAAGCAGCGGCTTTTGGGGTCTGCTGGTGCTGCTTCTGCTATGATGCACATCAAGTCCACAATATCTCAAATAAAGAGACTGATAGGGAGGAAATTTGCGGATCCTGATGTGGAAAAAGAGCTGAAAATGCTCCCTGTTGAAACTTCTGAGGGTCCAGATGGAGGCATTTTGATTCACTTGAAGTACTTGGGGGAGATTCATGTATTTACACCTGTTCAATTATTGTCCATGCTCTTTGCTCACTTGAAGACTATGACCGAAAAAGATTTGGAGATGCCCATTTCGGATTGTGTTATCGGGATCCCATCATACTTTACCGACTTGCAGAGACGGGCGTATCTTGATGCAGCGAAAATTGCCGGGTTGAAGCCTTTGAGATTGATCCACGATTGTACTGCAACTGCCCTTAGTTATGGAATGTATAAAACAGATTTTGGCAGTGCAGGTCCATTTTATGTTGCATTTATTGACATTGGTCACTGTGATACTCAGGTCTCTATTGCATCATTTGAATTTGGGAAAATGAAGATACTTTCGCATGCATTTGACAGGAGCTTAGGGGGGAGGGACTTTGATGAGGTTCTATTTAGTCATTTTGCAGCAAAATTCAAGGAAGAGTACCGCATTGACGTGCATTCTAATGCCAAGGCGTGCATTAGGCTACGTGCAGCTTGTGAGAAATTGAAGAAAGTTTTGAGTGCAAATCTAGAGGCACATCTAAATATCGAGTGCTTGATGGATGAGAAAGATGTTAAGGGCCTTATCACAAGGGAAGAATTTGAGAAGCTGGCATCAGGATTATTGGAGAGAGTTTCTAATCCTTGCCAAAGAGCATTAACTGATGCAAACTTGACACCAGAGAAGATTTCTTCTGTAGAGCTAGTTGGTTCAGGATCTAGGATTCCAGCTATAAGTACATTACTAACTTCTCTATTCAAGAGAGAACCCAGTCGACAGCTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTCTACAGTGTGCAATGCTCAGTCCCGTTTACCGTGTGAGAGAATACGAGGTCCAAGATGTTATTCCTTTTTCAATTGGACTTTCATCAGATGAAGGTCCAATTGCTGCGAGATCAAATGGTGTACTTTTCCCAAGAGGCCAACCATTTCCAAGTGTTAAAGTCATAACCTTTCAGCGAAGTAATTTGTTTCATTTGGAAGCTTTCTATGCTAATCCAGATGAACTACCACCTGGGACATCTCCCAAAATTAGTTGTGTCACGATTGGTCCTTTCCATGGATCCCATGGCAGTAAGACCAGAGTAAAAGTTAGAGTTCCACTTGATCTGCATGGCATTGTCAGTATTGAATCAGCTACATTGATCAAGGATGACATGGATGATTCGGTTATGGCGGGTGATTATCATTCAAATTCTGATCCAATGGATGTTGATCCCATTTCTGAGACAGTTACCAATGGGTTTGAAGATAATACCAATAAAAAGTCGGAATCTCCATGTAGTTCTGCAGATGGTACAAGAAAAGATAAGGCTAACAGAAGGCTTAATGTGCCAGTGAATGAGAATATCTATGGTGGAATGACAAAGGCAGAGATCTCAGAAGCTAGTGAAAAAGAACTCCAGTTGGCCCAACAGGACAGAATGGTAGAGCTAACCAAAGAAAAGAAGAATAGCTTGGAATCTTATGTCTATGATATGAGGAGTAAGCTCTTCCACACATATCGGAGCTTTGCAAGTGAACAAGAGAAGGATGACATATCTAGGAGCCTTCAAGAGACTGAGGAATGGCTTTATGAGGATGGTGTTGATGAAACTGAACATGCTTATTCTTCAAAACTGGAAGATCTGAAAAAGCTGGTAGATCCAATTGAGAATCGATACAAAGATGAAAAAGAAAGAGCACAAGCTACAGGAGATTTATCAAAGTGCATTTTAAAGCATCGCGCATCTACAGATTCCCTTCCGCCCCATGATAAAGAACTGATAATCAATGAGTGCAATAAAGCGGAGCAGTGGTTGAAAGAGAAGAACCAGCAACAAGAATCTTTTCCTAAGAATACTGACCCAATATTATGGTCAAGTGATATTAAGAACAAGGCAGAGGAGTTAAACTCAATATGCCAACGGATATTGGGATCCAAGGCATCTCCATCTCCAGAAGACAAAGACAAGCCGGATACTTTCAATGATCCATGA 2316 0.4175 MSVVGFDIGNENCVIAVVRQRGIDVLLNYESKRETPAVVCFSEKQRLLGSAGAASAMMHIKSTISQIKRLIGRKFADPDVEKELKMLPVETSEGPDGGILIHLKYLGEIHVFTPVQLLSMLFAHLKTMTEKDLEMPISDCVIGIPSYFTDLQRRAYLDAAKIAGLKPLRLIHDCTATALSYGMYKTDFGSAGPFYVAFIDIGHCDTQVSIASFEFGKMKILSHAFDRSLGGRDFDEVLFSHFAAKFKEEYRIDVHSNAKACIRLRAACEKLKKVLSANLEAHLNIECLMDEKDVKGLITREEFEKLASGLLERVSNPCQRALTDANLTPEKISSVELVGSGSRIPAISTLLTSLFKREPSRQLNASECVARGCALQCAMLSPVYRVREYEVQDVIPFSIGLSSDEGPIAARSNGVLFPRGQPFPSVKVITFQRSNLFHLEAFYANPDELPPGTSPKISCVTIGPFHGSHGSKTRVKVRVPLDLHGIVSIESATLIKDDMDDSVMAGDYHSNSDPMDVDPISETVTNGFEDNTNKKSESPCSSADGTRKDKANRRLNVPVNENIYGGMTKAEISEASEKELQLAQQDRMVELTKEKKNSLESYVYDMRSKLFHTYRSFASEQEKDDISRSLQETEEWLYEDGVDETEHAYSSKLEDLKKLVDPIENRYKDEKERAQATGDLSKCILKHRASTDSLPPHDKELIINECNKAEQWLKEKNQQQESFPKNTDPILWSSDIKNKAEELNSICQRILGSKASPSPEDKDKPDTFNDP 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00909 771 PANTHER HSC70CB, ISOFORM G-RELATED 1 762 - -
Pumo1g00909 771 Gene3D - 38 113 - -
Pumo1g00909 771 Gene3D - 5 374 - -
Pumo1g00909 771 FunFam Heat shock 70 kDa protein 16 isoform A 387 565 - -
Pumo1g00909 771 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Pumo1g00909 771 MobiDBLite consensus disorder prediction 756 771 - -
Pumo1g00909 771 FunFam Heat shock 70 kDa protein 4 38 113 - -
Pumo1g00909 771 FunFam Heat shock 70 kDa protein 4 567 677 - -
Pumo1g00909 771 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Pumo1g00909 771 Gene3D - 567 677 IPR029048 -
Pumo1g00909 771 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 691 751 IPR029048 -
Pumo1g00909 771 MobiDBLite consensus disorder prediction 509 555 - -
Pumo1g00909 771 FunFam Heat shock 70 kDa protein 4 230 313 - -
Pumo1g00909 771 CDD HSPA4_like_NDB 2 381 - -
Pumo1g00909 771 MobiDBLite consensus disorder prediction 749 771 - -
Pumo1g00909 771 Gene3D Actin; Chain A, domain 4 230 313 - -
Pumo1g00909 771 FunFam Heat shock 70 kDa protein 4 115 191 - -
Pumo1g00909 771 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 531 IPR029047 -
Pumo1g00909 771 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 667 IPR029048 -
Pumo1g00909 771 PRINTS 70kDa heat shock protein signature 2 15 - -
Pumo1g00909 771 PRINTS 70kDa heat shock protein signature 332 348 - -
Pumo1g00909 771 PRINTS 70kDa heat shock protein signature 30 42 - -
Pumo1g00909 771 PRINTS 70kDa heat shock protein signature 388 407 - -
Pumo1g00909 771 PRINTS 70kDa heat shock protein signature 140 160 - -
Pumo1g00909 771 PRINTS 70kDa heat shock protein signature 363 383 - -
Pumo1g00909 771 PRINTS 70kDa heat shock protein signature 472 488 - -
Pumo1g00909 771 FunFam Heat shock 70 kDa protein 4 1 80 - -
Pumo1g00909 771 Pfam Hsp70 protein 3 667 IPR013126 GO:0005524|GO:0140662
Pumo1g00909 771 Coils Coil 653 673 - -
Pumo1g00909 771 Gene3D - 186 360 - -
Pumo1g00909 771 MobiDBLite consensus disorder prediction 516 540 - -
Pumo1g00909 771 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 600 IPR029047 -
Pumo1g00909 771 MobiDBLite consensus disorder prediction 541 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00909 Pumo-Chr1 13658899 13664878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00909 2 663 Miscellaneous Gene Families AT5G28540 28.849 9.15e-80 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00909 K09489 - gmx:100783952 1414.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00909 1 13658899 13664878 Pumo1g00909 1 13658899 13664878 ECH