Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00848 ATGTGGCACTTCATGGCTCTCTCTCGTGTACTTGCTATACTCACGATGCTTCAGTGCTCATTGGTAGTACTGGTTTCTTCATCTGGACCACGAGGTGGCTGGAAAACATTGCAAGGATCTCCACCACTGGTCATAGCACGTGGAGGGTTTTCAGGGATATTTCCAGATTCAAGTTCACCTTCCTATAGTTTGGCACTAGACACTAGTGGCCCAAATGTGATTCTATGGTGTGATGTGCAATTGACAAAGGATGGAGTTGGGATTTGTTTCCCAGAGCTCAAGCTGGACAATGCCACTGACATTTCTGTTGTTTACCCTGGCAAGGCAAAGGATCACTCAGTTAATGGGGTCTCAACCCGGGGATGGTTTTCTCTGGATTACAAGTTTGATCAACTAGCAAATGTCTCTCTTGTTCAGGGAGTGTACTCTCGGACTGAAAAGTTTGATGGCAACAAGCTTCACATTCTCACTGTTGAAGAAGTAGCTAAATTAAGAAAATCACCATCTACAGGCCTGTGGTTAAATGTTCAGCATGATTCATTCTTCAAGCAACAGAATTTGAGTGTAGAAAAATTTCTACTATCTCTCTCTACTAAAAGTGTATCTGTCAATTACATCTCATCACCTGATGTGGGTTTCTTAAGAAGAGTAAAATCAAGCTTTGGTCCTGGAACAATCTGCCTGATCTTCAGGATTCTAGAGCAGTCTAAGATTGAACCTACAACCAATCAGACTTATGGTGAACTCTTGAAAAAACTCGCGCTTATCAAGACATTTGCTTCAGGAATTCTTGTTCCCAAGGGCTATATATGGCCTGTAGACTCAGACCTTTATCTACAACCACATACCCCTCTTGTCTCAGATGCTCATAAAGTAGGGCTGCAAGTTTTTGTATCAGACCTTATCAATGATGTTCCATTTAGTTACAATTTCAGCTATGATCCTCTGGCTGAGTGTCTATCTTTCATTGATGGTGGTGATTTCTCTGTTGATGGTGTGTTGTCTGACTTCCCAGTCACTCCATCTGCAGCCATAAGTAAGTTTTGTTTCCCTTTGGACATTTTGGTTATCACAAAATATGGAGCAAGTGGAGACTATCCTGCTTGTACTGACCTTGCATATAAGAAAGCTAAATCAGATGGGGCAGATGTACTTGACTGTCCTGTTCAAATGTCCAAGGATGGAATACCCTTTTGCCTGAGCTCTATAGATCTTTCAGAGAGCACAACAGTAGCTGATACAAAATTCAAAAACCGTGCAACAACTATTCGGGAGATCAAAAATACCAGTGGCATATATACATTCAGCTTGACATGGGATGAGATAAAAACATTGACTCGCTCTCGCATCTTGATCAGCATAGAGAATGCTGCCTTTCTTGCAGTGAAGCAGAAATTAAGTGTGACCAATGCAGTCCTTGATGCATTACAGAAAGCAAAACCAAGATCACATAAAGTTATGATTCAGTCAACTCATAGCTCTGTGCTGAAGATATTCAAAGATAAATCCAAATATGAAAGGGTTTACAAGATTGATAAGAATATTCAAGATGCTGCTGACTCAGCAATTAAGGACATCAAAACATTTGCTGATTCTGTGGTAATAGGAAAGACATCTGTTTTTCCAGAAACTGCAGCCTTTCTGGTTAGCTCTACAAACACTGTGGCAAGGCTAAAATCATTTAAGCTCCCAGTTTATGTAGAAACTTTCAGCAATGAATTTGTATCTCAAGCATGGGACTACTACTCAGATCCATCTATTGAGATAAATTCATTTGTCATTGGAGTCAAGGTTAATGGCATTATTACTGACTTCCCCAAGACAGATGATAGATACAGGAGGAACTTGTGTTTAAAGCATCGCAACAAAGCACTGTATACGAGCCCTGTTGAACCTGGCAAACTTTTAAAACAAATTTCTAAGTCATACTTTCCACCACTTCCCCCTCCACTCCCAGTCTTGACTGATAGTGATGTGACAGAGGCACCTTTGCCTGGTGTGTCTGGAAGAGTTCCAACTACCAGAGCTGCTCCAGCCCACATCACAGCATAA 2052 0.4113 MWHFMALSRVLAILTMLQCSLVVLVSSSGPRGGWKTLQGSPPLVIARGGFSGIFPDSSSPSYSLALDTSGPNVILWCDVQLTKDGVGICFPELKLDNATDISVVYPGKAKDHSVNGVSTRGWFSLDYKFDQLANVSLVQGVYSRTEKFDGNKLHILTVEEVAKLRKSPSTGLWLNVQHDSFFKQQNLSVEKFLLSLSTKSVSVNYISSPDVGFLRRVKSSFGPGTICLIFRILEQSKIEPTTNQTYGELLKKLALIKTFASGILVPKGYIWPVDSDLYLQPHTPLVSDAHKVGLQVFVSDLINDVPFSYNFSYDPLAECLSFIDGGDFSVDGVLSDFPVTPSAAISKFCFPLDILVITKYGASGDYPACTDLAYKKAKSDGADVLDCPVQMSKDGIPFCLSSIDLSESTTVADTKFKNRATTIREIKNTSGIYTFSLTWDEIKTLTRSRILISIENAAFLAVKQKLSVTNAVLDALQKAKPRSHKVMIQSTHSSVLKIFKDKSKYERVYKIDKNIQDAADSAIKDIKTFADSVVIGKTSVFPETAAFLVSSTNTVARLKSFKLPVYVETFSNEFVSQAWDYYSDPSIEINSFVIGVKVNGIITDFPKTDDRYRRNLCLKHRNKALYTSPVEPGKLLKQISKSYFPPLPPPLPVLTDSDVTEAPLPGVSGRVPTTRAAPAHITA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00848 683 CDD GDPD_SHV3_repeat_1 42 344 - -
Pumo1g00848 683 ProSiteProfiles GP-PDE domain profile. 42 345 IPR030395 GO:0006629|GO:0008081
Pumo1g00848 683 SUPERFAMILY PLC-like phosphodiesterases 355 612 IPR017946 GO:0006629|GO:0008081
Pumo1g00848 683 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 19 446 - -
Pumo1g00848 683 SUPERFAMILY PLC-like phosphodiesterases 41 341 IPR017946 GO:0006629|GO:0008081
Pumo1g00848 683 MobiDBLite consensus disorder prediction 664 683 - -
Pumo1g00848 683 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 40 344 - -
Pumo1g00848 683 Pfam Glycerophosphoryl diester phosphodiesterase family 361 446 IPR030395 GO:0006629|GO:0008081
Pumo1g00848 683 Pfam Glycerophosphoryl diester phosphodiesterase family 465 608 IPR030395 GO:0006629|GO:0008081
Pumo1g00848 683 ProSiteProfiles GP-PDE domain profile. 354 613 IPR030395 GO:0006629|GO:0008081
Pumo1g00848 683 Gene3D Phosphatidylinositol (PI) phosphodiesterase 449 610 IPR017946 GO:0006629|GO:0008081
Pumo1g00848 683 Gene3D Phosphatidylinositol (PI) phosphodiesterase 354 448 IPR017946 GO:0006629|GO:0008081
Pumo1g00848 683 Gene3D Phosphatidylinositol (PI) phosphodiesterase 41 344 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00848 Pumo-Chr1 12955439 12963173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00848 15 674 Receptor kinase-like Gene Family AT4G26690 50.907 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00848 - - gmx:100813869 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00848 1 12955439 12963173 Pumo1g00848 1 12955439 12963173 ECH