Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00776 ATGCAACTCCTCCGGGCAGTGCTGGCAGCGGCGCTGCTCCTTCTCCTCGCCCCCTCCGACGCGCACAACATCACGAGCATCCTCGCGAAGCACCCGGAGTTCTCGACCTTCAACCACTACCTGACCCTGACCCACCTGGCCCCCGAGATCAACGGCAAGACCACCATCACCGTCTGCGCCGTCGACAACGCCGCCATGTCCGACCTCCTCTCCAAGCACCCCTCCATCTACACCATAAAAAACATCCTCTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAAAAGCTCCACCAGATCACCAACGGCACCGCCCTCGCCGCCACAATGTACCAGGCCACCGGCACCGCCCCGGGCTCCGCCGGCTTCGTCAACATCACCGACCTCCACGGCGGAAAAGTCGGCTTCGGCGCCGAGAACAACGACGGCGAGCTCTCCTCCACCTTCGTCAAATCCGTACAAGAAATCCCTTACAACATCTCCGTAATCCAGATCAGCAAAGTTCTCCCCTCGGCCGCAGCGGAAGCCCCTGCACCCGCACCCACCCAAAAAAACCTCACCAGCATCATGTCCAAACACGGCTGCAAAGTCTTCGCCGACACTCTCTCCGCGCATCCCGATGCGCTCAACACCTTCAACGACAACCTCGACGGTGGACTGACCGTCTTCTGCCCCCTCGACGACGCGTTTAAGGCCTTCCTCCCCAAATTCAAAAACCTAACCGCCTCTGGTAAGGTCGCGCTTCTCGAATTCCACGCCGTTCCGGTTTACCAGTCCAAAGCTACACTCAAATCGAATAACGGACTTCAGAACACTCTCGCCACTGATGGAGCTAACAATTACGACTTCACTGTGCAAAACGACGGCGAAGATGTTACTCTTAAGACCAAGCTCACCACTGCCAAGATCACCGACACGTTAATTGATGAGCAGCCTCTCGCGATTTTCGCTATTAATAAGGTGCTTCAGCCTAAGGAGTTGTTCAAGGGTGAGGCAGAGGCTCCGGCGCCGGCGCCCGAGCCTGCTGCCGCCGACGCTCCCGCGCCGGCGAAGAAGAAGGGGAAGAAGAAAAAGGCTGCCGATGCGCCCGCGGATGCTTCCGACGCTCCTGCTGATTCCCCCGATGATGCTGCCGATGTGACCGCCGACGACAGTAACGGCGCCGTTAAAGCTAACGGCGGGAGGTACGGTGGTGTTGTTGCCTTGGCTTTGGGTTTGGTTTTTGGGTTACCGTTAGTGCTGTGA 1245 0.5863 MQLLRAVLAAALLLLLAPSDAHNITSILAKHPEFSTFNHYLTLTHLAPEINGKTTITVCAVDNAAMSDLLSKHPSIYTIKNILSLHVLLDYFGAKKLHQITNGTALAATMYQATGTAPGSAGFVNITDLHGGKVGFGAENNDGELSSTFVKSVQEIPYNISVIQISKVLPSAAAEAPAPAPTQKNLTSIMSKHGCKVFADTLSAHPDALNTFNDNLDGGLTVFCPLDDAFKAFLPKFKNLTASGKVALLEFHAVPVYQSKATLKSNNGLQNTLATDGANNYDFTVQNDGEDVTLKTKLTTAKITDTLIDEQPLAIFAINKVLQPKELFKGEAEAPAPAPEPAAADAPAPAKKKGKKKKAADAPADASDAPADSPDDAADVTADDSNGAVKANGGRYGGVVALALGLVFGLPLVL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00776 414 ProSiteProfiles FAS1/BIgH3 domain profile. 182 322 IPR000782 -
Pumo1g00776 414 SMART fasc_3 221 325 IPR000782 -
Pumo1g00776 414 SUPERFAMILY FAS1 domain 27 169 IPR036378 -
Pumo1g00776 414 MobiDBLite consensus disorder prediction 331 388 - -
Pumo1g00776 414 Pfam Fasciclin domain 195 324 IPR000782 -
Pumo1g00776 414 Pfam Fasciclin domain 32 107 IPR000782 -
Pumo1g00776 414 FunFam Fasciclin-like arabinogalactan protein 2 20 162 - -
Pumo1g00776 414 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 398 IPR033254 -
Pumo1g00776 414 FunFam Fasciclin-like arabinogalactan protein 10 175 325 - -
Pumo1g00776 414 Gene3D FAS1 domain 168 325 IPR036378 -
Pumo1g00776 414 Gene3D FAS1 domain 19 167 IPR036378 -
Pumo1g00776 414 ProSiteProfiles FAS1/BIgH3 domain profile. 21 169 IPR000782 -
Pumo1g00776 414 SUPERFAMILY FAS1 domain 178 325 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00776 Pumo-Chr1 11516500 11517912 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00776 - - gmx:100810878 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00776 1 11516500 11517912 Pumo1g00776 1 11516500 11517912 ECH