Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00543 ATGAGTTTATCATTTTCTTCGCTGACAGCAAAGCTTTGTTGTTCCATCAGTGGGAGCAATAGGAAACCATGTTGTGGTCGTACAAGATTTGGTGTTGTAAGGTCGGAAGTAAACGTGGTTCCCAAACAAAGAAGAGGGAGCGTGTTTCCCCAGTTGTCAAAACAAGTTGCTGATTTACATGTACAAGAGGTTGTTCACAGGCAGTCTCAAATCATTAGTCCTTGTAGCAAGCCTAAGCCACAGTTCGAGCCCACTTTTCTTAATGATGCCTATGAAATGTGCAGAAATATTTGCGCGGAATATGCCAAGACCTTTTATCTAGGAACCTTGCTTATGACGGAAGAAAGACAGAAAGCTATATGGGCAATTTATGTTTGGTGCAGGAGGACGGATGAATTGGTTGATGGTCCTAACGCTGTGTATATGAGCTCTGCTGTTCTTGATAGGTGGGAAGATAGATTGCACGACATTTTCAATGGACAACCCTATGATATGCTTGATGCTGCTCTTACTGATACCATCTCCAAGTTTCCCTTGGATATTAAGCCTTTCAGGGACATGATACAAGGCATGAGAATGGATACAAGGAATGCCCGATACAACAATTTCCAAGAGTTATATCTTTACTGCTACTATGTGGCGGGAACTGTCGGCTTAATGACTGTTCCAATAATGGGCATTGCCCAGGAATCTGTCATCCCAGTTCAAAGTGTATATGATGCTGCACTATATCTGGGTGTAGGAAATCAACTCACAAACATTCTTAGAGATGTGGGGGAGGATGCATTAAGAGGTAGAGTGTACCTTCCCCAAGACGAACTAGCCCAGTTTGGATTATGTGACAAGGATGTTTGTTCAAGAAAGGTCAGTGAAAGATGGAGAAAGTTTATGAAATATCAGATTACAAGGGCAAGATTCTACTTCAACCGGGCAGAAGAAGGAGTTTCTCAGCTCGAAAAGGCCAGCCGTTGGCCGGTTTGGTCATCATTAATATTGTATCGTAAGATCTTGGATGCAATTGAAGACAACGATTACGACAATTTGACTAAACGAGCCTATGTGGGACGAGCTAAGAAATTTTTGACGTTGCCTCTAGCTTATACTAGATCTCTCTCAAATCCCAAAACGAAATTTCGTCCTTCTTTAACAAGGCCTGCCTATCTAGCAATTTTTCTGCCAAATTACTTGGCTTCCTTGTACAGACGATAG 1209 0.421 MSLSFSSLTAKLCCSISGSNRKPCCGRTRFGVVRSEVNVVPKQRRGSVFPQLSKQVADLHVQEVVHRQSQIISPCSKPKPQFEPTFLNDAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAVYMSSAVLDRWEDRLHDIFNGQPYDMLDAALTDTISKFPLDIKPFRDMIQGMRMDTRNARYNNFQELYLYCYYVAGTVGLMTVPIMGIAQESVIPVQSVYDAALYLGVGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDKDVCSRKVSERWRKFMKYQITRARFYFNRAEEGVSQLEKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRAKKFLTLPLAYTRSLSNPKTKFRPSLTRPAYLAIFLPNYLASLYRR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00543 402 SUPERFAMILY Terpenoid synthases 89 372 IPR008949 -
Pumo1g00543 402 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 47 373 - -
Pumo1g00543 402 Pfam Squalene/phytoene synthase 101 356 IPR002060 GO:0009058
Pumo1g00543 402 FunFam Phytoene synthase chloroplastic 83 365 - -
Pumo1g00543 402 SFLD Squalene/Phytoene Synthase Like 88 370 IPR002060 GO:0009058
Pumo1g00543 402 ProSitePatterns Squalene and phytoene synthases signature 2. 245 270 IPR019845 GO:0016765
Pumo1g00543 402 SFLD Phytoene synthase like 88 370 IPR044843 GO:0004311
Pumo1g00543 402 Gene3D Farnesyl Diphosphate Synthase 83 365 IPR008949 -
Pumo1g00543 402 CDD Trans_IPPS_HH 92 359 IPR033904 GO:0004311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00543 Pumo-Chr1 7276129 7277812 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00543 K02291 - gmx:100782394 702.205