Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00539 ATGATTTCGAAAAGCAAAAGGGTGAGGGATCATCATGTAGCACTCTCGTCCATGTTGCTACTGCTGGTTGGTTTTGCAAAGTCAGATTTAAGCAAGGACAGAGAAGAATGTGCAGACAAACTAATTGGGCTAGCTAGCTGTGTTCCTTACGTTGGTGGTGAAGCCAAAACCCCCACCATAGATTGCTGCAGTGGTCTCAAAGTGGTCCTTGAGAAGAGCAAGAAATGCATCTGCATCCTCATCAAAGATCGCGACGACCCCAATCTTGGCATCAAGATCAATGCCACTCTCGCTATTCAACTACCCACTGCTTGCCACGCACCTGCTAATATAACTCAGTGTGTAGATCTTTTGCATTTAGCACCTAACTCTCCTGATGCTAAGGTGTTTGAGGGATTCGCCAAAACAAACAGTTCCACCACCCCAGTTTCCAGTGGTGGTGCTGAGAAGAAGGGATCAAGCTCAAGTGCTCAGGAAAAGAGTGGTGCTGTGTCCACGGTGCCACACCTGCTTTACTCTATCTTACCATTATTTTTATTTCTCTTCCTCCTTGTTTAG 558 0.4606 MISKSKRVRDHHVALSSMLLLLVGFAKSDLSKDREECADKLIGLASCVPYVGGEAKTPTIDCCSGLKVVLEKSKKCICILIKDRDDPNLGIKINATLAIQLPTACHAPANITQCVDLLHLAPNSPDAKVFEGFAKTNSSTTPVSSGGAEKKGSSSSAQEKSGAVSTVPHLLYSILPLFLFLFLLV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00539 185 MobiDBLite consensus disorder prediction 138 158 - -
Pumo1g00539 185 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 34 114 - -
Pumo1g00539 185 Pfam Probable lipid transfer 28 114 IPR016140 -
Pumo1g00539 185 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 36 115 IPR036312 -
Pumo1g00539 185 CDD AAI_LTSS 44 106 - -
Pumo1g00539 185 Gene3D - 34 114 IPR036312 -
Pumo1g00539 185 SMART aai_6 37 114 IPR016140 -
Pumo1g00539 185 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 20 155 IPR043325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00539 Pumo-Chr1 7255279 7256296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00539 2 180 Acyl Lipid Metabolism Gene Families AT1G55260 47.849 3.96e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00539 - - pvu:PHAVU_001G268300g 254.988