Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00535 ATGGACTTGGTGGAATTGGAGGCGGTGGAAGGGCTCCGATGGGCGTGGAATTCGTGGCCGGCTGAGGGGACGAATCTGATAATCCCACTCAGCATAATGTGCACACCCTTGATGTTGAACAGTGAGGTCCCTCTTCTCCCTTACGATCCCCTTCTCTGCTCCCGATGCGGCGCCGTTTTGAACCCCTACGCACGCCTCGACTACCAGTCCCGCATCTGGCACTGCCCCTTCTGCTCCCTCCGCAACCCCTTCCCCCGTCCCATCGCCGACACCAACCTCCCAGCCGAACTCTTTCCCACCTACAGCACCGTCGAATATCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTCCCTTTCGCCTTCGTCTTTCTCCTCGATCTCTCCTCTCCCCAAGACGAACTCCTACCCCTCAAGAACGAGCTCCTCCTCCTCCTCCACCACCACTTGCCCCACCACGCCCTCGTCGCTCTCATCACCTTCGACTCCATGGTCTATCTCCATCACCTCGCTTCTTCCCACTCTTCCTCACTCCACGTCTTTCACGGCAACCGCCATCTCTCCTCCAATAAGGTATCTATCTATCTAATTCCATTCCATTCCAACCAATTTAATTCCTTACTTTTACTTACCCGTTACCACTCATTTATTTCATCTCAGATCCGGCATTTCCTTAACATGAACCATCGCCATGGACAAACACCCAAGCAGGATTTTCTGTTGCCAATTTCCGAATGCCAATTCTCTATCACTGCTGCCATTGAAGAGATCCATTCTACATCCCCATCCCCATCCCCATCCCACACTCGTCCTCCAAGGTGCACCGGTGCTGCAATTTCCGTCGCCCTTGGACTTTTAGAGTCTTGCCTCATCAATTCAGGCTCCAGGATCATGCTCTTCACCTCTGGACCTGCTACTCTCGGACCTGGAATCGTTGTTGATTCTGATCTCCGCCACTCCATCAGAACCCACCATCACATCTTCAACGCCCAAGCTACACATTACGCTAAGTCTTGCACTTTCTATAACCAACTCTCCCAGAGGCTATCCCATGCATCTGTTGTTCTTGATCTCTTTGCTTGTTCCCTTGATCAAGTTGGAGCAGCTGAGCTTCGACAACCCGTCGAGCGCTCCGGTGGATTCATCATTCTCTCTGACTCTTTTCATTCCGATCAGTTCAAAAAATGTCTCAGGCACATGTTCAAATCTGATCACCAGGGCCATTTGAATATGAATTTTGATGCAACTATTGAAATAGTCACCACTAAAGATGTCAAAATCTGTGGAGCGCTTGGTCCTTGTCTGTCTCTTCACAGAAACAACAGTTTGGTCAGTGAGGCTGAGGTTGGCCAAGCTGGTACCTCTATCTGGAAGTTAAACACACTCACCCACAAAACTTGCGTTGCTTTTTTCTTCCAAGTCAATCAGGAGCAGAAAATTCAACCTGGCTCTGCATTTTTAATTCAGTTTATCACGCGATACAGGCAGGGGAACACGGGACACCGGAAAAGAGTGACCACTGCTGCAAGGCGATGGGTTGCAAACCATTCAGCAGATATTGCTGCTGGGTTTGATCAGGAAGCCGCGGCTGCAGTTATGGCCAGACTTGCCATTCTCCGGGCCGAGACATGCCATGCTCGTGATGTCATTAGATGGCTGGATGACACACTAATACGGTTTACTTCCAAGTTTGGGGACTATGTGCCAGAAGACCCATCTTCGTTCCGCTTATCCTCCAACTTTTCCCTTTACCCCCAGTTTATGTTCCACTTGAGGCGATCTCAATTCATTGATGTCTGTAACACTACTCCTGATGAAACTGCATTTTTCCGGCTCGTGCTGAATCGCGAGGGAGTAGTAGGTTCTCTTATAATGATTCAACCTACACTTTTCCAATATTCGTTTGATGGGCCACCTGTTCCAGTACTTCTGGATATTCGTTCCATTTCTCCCGATTTTATCTTGCTCTTTGATTCTTTTTTCTATGTGGTGATTCATTATGGGTCCAAGATTGCCCAGTGGAAGAAGCTGGGTTATGACAAGGACCCCAATCATGAGAATTTCAGAAAGCTCTTGGAAGCACCGGAATTGGATGCAGAGCAATTGGTGGCTGACCGGGTTCCAGTGCCAAGGATTATAAGATGTGACCAGCATAGTAGTCAGGCTAGATTTCTTCTTGCCAAGTTGAATCCGTCTGTTACTCAAAATTCAACCTACACAGATGGTTCGGATATTATATTTACCGATGACCTGAGCTTGGAGGTTTTTCTAGATCAGTTGCAGGTACTGGCAGTGCAAAGCTAA 2304 0.4848 MDLVELEAVEGLRWAWNSWPAEGTNLIIPLSIMCTPLMLNSEVPLLPYDPLLCSRCGAVLNPYARLDYQSRIWHCPFCSLRNPFPRPIADTNLPAELFPTYSTVEYHSSSSSSSSSSVPFAFVFLLDLSSPQDELLPLKNELLLLLHHHLPHHALVALITFDSMVYLHHLASSHSSSLHVFHGNRHLSSNKVSIYLIPFHSNQFNSLLLLTRYHSFISSQIRHFLNMNHRHGQTPKQDFLLPISECQFSITAAIEEIHSTSPSPSPSHTRPPRCTGAAISVALGLLESCLINSGSRIMLFTSGPATLGPGIVVDSDLRHSIRTHHHIFNAQATHYAKSCTFYNQLSQRLSHASVVLDLFACSLDQVGAAELRQPVERSGGFIILSDSFHSDQFKKCLRHMFKSDHQGHLNMNFDATIEIVTTKDVKICGALGPCLSLHRNNSLVSEAEVGQAGTSIWKLNTLTHKTCVAFFFQVNQEQKIQPGSAFLIQFITRYRQGNTGHRKRVTTAARRWVANHSADIAAGFDQEAAAAVMARLAILRAETCHARDVIRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFHLRRSQFIDVCNTTPDETAFFRLVLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSISPDFILLFDSFFYVVIHYGSKIAQWKKLGYDKDPNHENFRKLLEAPELDAEQLVADRVPVPRIIRCDQHSSQARFLLAKLNPSVTQNSTYTDGSDIIFTDDLSLEVFLDQLQVLAVQS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00535 767 SUPERFAMILY vWA-like 118 402 IPR036465 -
Pumo1g00535 767 Gene3D von Willebrand factor, type A domain 119 411 IPR036465 -
Pumo1g00535 767 FunFam Protein transport protein SEC23 47 103 - -
Pumo1g00535 767 Pfam Sec23/Sec24 trunk domain 119 399 IPR006896 GO:0006886|GO:0006888|GO:0030127
Pumo1g00535 767 SUPERFAMILY Helical domain of Sec23/24 525 627 IPR036175 GO:0006886|GO:0006888|GO:0030127
Pumo1g00535 767 Gene3D Sec23/Sec24 helical domain 522 764 - -
Pumo1g00535 767 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 4 766 IPR037364 -
Pumo1g00535 767 Gene3D Severin 627 731 IPR029006 -
Pumo1g00535 767 CDD Sec23_C 617 737 IPR037550 GO:0030127|GO:0090114
Pumo1g00535 767 SUPERFAMILY Zn-finger domain of Sec23/24 42 110 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Pumo1g00535 767 Pfam Sec23/Sec24 helical domain 525 621 IPR006900 GO:0006886|GO:0006888|GO:0030127
Pumo1g00535 767 Pfam Gelsolin repeat 639 725 IPR007123 -
Pumo1g00535 767 Pfam Sec23/Sec24 beta-sandwich domain 413 513 IPR012990 -
Pumo1g00535 767 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 628 766 IPR036180 -
Pumo1g00535 767 FunFam Protein transport protein SEC23 627 731 - -
Pumo1g00535 767 FunFam Protein transport protein SEC23 410 510 - -
Pumo1g00535 767 Gene3D - 47 103 - -
Pumo1g00535 767 Pfam Sec23/Sec24 zinc finger 50 86 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Pumo1g00535 767 Gene3D - 6 510 - -
Pumo1g00535 767 SUPERFAMILY beta-sandwich domain of Sec23/24 3 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00535 Pumo-Chr1 7193697 7196416 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00535 K14006 - gmx:100784000 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00535 1 7193697 7196416 Pumo1g00535 1 7193697 7196416 ECH