Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00509 ATGAGTACCGTTGATAAAATGTTGATAAAGGGCATCCGGAGTTTCGACCCGGAGAACAAGAATGTGATAACGTTCTTCAAGCCCTTAACCCTAATCGTTGGCCCCAACGGTGCTGGGAAGACGACGATCATAGAGTGCTTGAAGCTTTCGTGCACGGGGGAGTTGCCACCTAACGCGAGGTCTGGGCACAGCTTCATCCACGACCCAAAGGTTGCAGGGGAAACCGAAACCAAGGGACAGATTAAGCTCCGATTCAAAACGGCGGCTGGTAAAGACGTGGTGTGCGTAAGGTCTTTTCAGCTCACACAGAAGGCCTCCAAGATGGAATACAAGGCAATCGAGAGTGTCCTTCAAACTATTAATCCTCACACAGGTGACAAAGTTTGCCTCAGCTATCGATGTGCTGACATGGATCGAGAGATTCCTGCCCTCATGGGTGTTTCCAAGGCCATTCTCGAAAATGTTATATTCGTTCATCAAGATGAAGCCAACTGGCCACTCCAGGATCCTTCCACCTTAAAGAAGAAGTTCGACGATATCTTTTCAGCAACCAGATACACCAAGGCTCTCGAAGTTATAAAAAAACTTCACAAGGACCAGGCTCAAGAGATTAAGACTTACAAGCTCAAACTGGAAAATCTTCAGACTCTCAAAGATGCTGCTTACAAGCTCCGGGAAAGCATTGCACAGGATCAAGAGAAAACAGAGTCTGTAAAATCTCAACTACAACAGTTGGATGGGAGCATTAAAGATTTGGATGATCAAATTCATCACGCCGAGAACACACTGAAAGATTTGCGCAAGCTGCAAGAGCAGATATCAACTACAACTGCTCAACGAAGCACCCTGTTTAAGGAACAACAGAAACAATATGCAGCTCTCACTGAGGAGATTGAAGACACTGATGAAGAGTTGATGGAATGGAAGACCAAGTTTGAAGAAAGGATTGCAAGTTTAGAAACAAAAATAAGCAGGTTGGAAAGAGAAACGGAGGACATTGACTCTAAAAGTTCTATCCTTAAGCAGACCATTGATGAATCCATCCACGAGATTGCCAAGCTACAAGCTGAAGCAGAAGCTCACATGTCATTGAAGAACGAACGTGATTCCTCCATTCACAATCTTTTTGCTACATATAATTTAGGATCTCTTCCAAAGTCACCTTTCGGTGCTGAGGTTGCTTTAAACCTCACTAATCGTGTAAAGTCGAGGTTGGCAGATCTTGAGAAGGATCTGGATGATAAAAAGAAAGCAAATGACAATGAAATTAAGATGGCATTTGATTGCTACATGAATGCTAATGACCGTTTGAAACATACTGAGGCTAAAATAAAGGCTATGATAGGGAGCAAGAGTGGCATTTTGAAGCGCATTGAAGAGAAGAAAAATGAGCTTGATTCACTTGAACTTCAAATATCTAATGAAAACTTCTCTCAATTAGATGAAAGAGAAAGAAATTTGAAAAATGAGGTTGAGAGGAAGGCAAGCCAACTCGCTGAAAGACAATTTGAACCAAATAAATGTCAAGTGGAAAAGGAGATATATAGTTTAGATCAAAAGATTAAGGCTGTCAATCGAGAAAAGGATGTCATGGTTTCTGATTCAGAGGACAGAGTTAAGCTATCTCTTAAGAAGGCAGAGTTGGAAAATCAGAAGAAGAAACATAAAAAGATAATTGATGACCAAAAGGACAGAATAAGAAAGGTGCTGAAAGGGAGGGTTCCTCTCGATAAGGATGTGAAGAAGGAAATTACACAAGCATTAAGGGCTGTTGGAGCTGAATTTGATGACCTGAATGCAAAGTACCGTGAAGCTGAGAAGGAAGTCAATATGTTGCAGGTGAAAATACAAGAAGTTAATAGTAACCTATCCAAACACCACAAGGATTTGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGTCTTTGGATCAGCAATGTTCTGGAATTGATTCTTATCTCAAAGTTTTAGAGTCTGCCAAGGAGAAAAGAGATGTCCAAAGAAGCAAATATAATATTGCTGATGGTATGCGGCAAATGTTTGATCCTTTTGAAAGGGTTGCAAGAGCTAATCATGTTTGCCCTTGCTGTGAGCGCCCTTTCTCTTCAGAAGAAGAAGACAGTTTTGTCAAGAAGCAAAGAGTGAAGGCTACCAGTTCAGCTGAACATATGAAAGTTCTTGCGGTAGAGTCCTCAAATGCAGAGTCTCATTATCAGCAGCTGGACAAGCTTCGTATGCTTTATGAAGAATATGTTAAACTTGGCAAGGAGACAATCCCTAATGCCGAAAAGCAACTTCAGCAACTTAAAGAAGAGATGGATGACAAATCTCAGGCTCTTGATGATGTTTTAGGTGTTTTAGCACAAGTAAAGACTGACAAGGATTTGGTTGAGACATTGGTGCAACCTGTTGAAAATGCTGACCGGCTTTTCCAAGAAATTCAAGCCTTGCTAAAGCAAGTTGAGGATTTAGAATATAAGCTTGATTTTCGAGCACAGGGAGTGAGGACTCTGGAAGAGATTCAATTGGAGCTTAACACATTGCAGAGCACAAAGGACAATTTGCAATCTGAATTGGATCGGTTGAGGGATGAACAGAGGCATATGGAGAATGATCTATCAAATATTCAAATACGGTGGCACACTGTAAGGGAGGAGAAAACGAAGGCAACTAACATATTGGAAGGTGTTAAAAAATTAGAAGAAGAATTGGAACGTTTAAATGAAGAAAAGACCCAAGTTGATCTTGATGAGAAGGTGTCTAATTATCTGATACATTGA 2784 0.4088 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTINPHTGDKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKTESVKSQLQQLDGSIKDLDDQIHHAENTLKDLRKLQEQISTTTAQRSTLFKEQQKQYAALTEEIEDTDEELMEWKTKFEERIASLETKISRLERETEDIDSKSSILKQTIDESIHEIAKLQAEAEAHMSLKNERDSSIHNLFATYNLGSLPKSPFGAEVALNLTNRVKSRLADLEKDLDDKKKANDNEIKMAFDCYMNANDRLKHTEAKIKAMIGSKSGILKRIEEKKNELDSLELQISNENFSQLDERERNLKNEVERKASQLAERQFEPNKCQVEKEIYSLDQKIKAVNREKDVMVSDSEDRVKLSLKKAELENQKKKHKKIIDDQKDRIRKVLKGRVPLDKDVKKEITQALRAVGAEFDDLNAKYREAEKEVNMLQVKIQEVNSNLSKHHKDLESRKRFIESKLQSLDQQCSGIDSYLKVLESAKEKRDVQRSKYNIADGMRQMFDPFERVARANHVCPCCERPFSSEEEDSFVKKQRVKATSSAEHMKVLAVESSNAESHYQQLDKLRMLYEEYVKLGKETIPNAEKQLQQLKEEMDDKSQALDDVLGVLAQVKTDKDLVETLVQPVENADRLFQEIQALLKQVEDLEYKLDFRAQGVRTLEEIQLELNTLQSTKDNLQSELDRLRDEQRHMENDLSNIQIRWHTVREEKTKATNILEGVKKLEEELERLNEEKTQVDLDEKVSNYLIH 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00509 927 Coils Coil 884 918 - -
Pumo1g00509 927 Pfam AAA ATPase domain 26 358 IPR041685 -
Pumo1g00509 927 Coils Coil 398 425 - -
Pumo1g00509 927 Coils Coil 242 279 - -
Pumo1g00509 927 Coils Coil 839 880 - -
Pumo1g00509 927 Coils Coil 805 828 - -
Pumo1g00509 927 ProSiteProfiles Rad50 zinc-hook domain profile. 648 747 IPR013134 -
Pumo1g00509 927 Coils Coil 588 622 - -
Pumo1g00509 927 Gene3D - 190 380 - -
Pumo1g00509 927 Coils Coil 284 336 - -
Pumo1g00509 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 293 IPR027417 -
Pumo1g00509 927 FunFam DNA repair protein RAD50 3 300 - -
Pumo1g00509 927 Coils Coil 451 497 - -
Pumo1g00509 927 PANTHER RAD50 1 920 - -
Pumo1g00509 927 Pfam Rad50 zinc hook motif 688 724 IPR013134 -
Pumo1g00509 927 Coils Coil 627 647 - -
Pumo1g00509 927 Gene3D - 3 167 IPR027417 -
Pumo1g00509 927 Coils Coil 538 565 - -
Pumo1g00509 927 Coils Coil 753 787 - -
Pumo1g00509 927 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00509 Pumo-Chr1 6751590 6757133 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00509 K10866 - gmx:100818545 1600.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00509 1 6751590 6757133 Pumo1g00509 1 6751590 6757133 ECH