Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00491 ATGGTGAATGCAGTCAGTCAGAGTCAGAGTCACTTTGTGGTGGCGCTGTTGAACTCCAATTGCAAAGTGAGCAAGAGTAGTAGCAATAGCAATAGCAATAGAGTCTTCCGAAAACCCTTTGCGAAATTCCCATCCCTCACCACTCAAATTTGTCACGCCTCTTACCACCGATTACCATCATTCGCTGACTCAAAGCACACAACCCTTCTGGTTGAGACTTACCATCTCCATCACAGCCTCAGAGCCTTACTTGCTAAGCTTGAGAGGGAAGATTCGAACCCTCTCCACATACTCGCAGAAGATGCTGATTGGTCCAAAGACCATTTTTGGGCCATTGTAAGGTTCCTTAAAAACGCCTCAAGGTTCACCCAAATCCTTCAGGTGTTTGATATGTGGAAGAACATTGAGAAATCGCGGATTAATGAGCTCAACTATAACAAGATCATAGGCTTGTTATGTGAAGGAGGAATGACGGAAGATGCGTTATCTGCATTGCAAGAGATGAAAGTTCAAGGTATCAAGCCTTCTTTGGACACTTACAATCCAATAATTAATGGGTTATCCAGAGAAGGTAAGTTCAGTGATGCTTTACGTTTTATTGATGAGATGAAAGAATCTGGCTTAGAGCTGGATTCTGAAACCTATGATGGTTTGATTGGAGCCTATGGGAAATTTCAAATGTATGATGAGATGGGTGAGTGTTTGAGAAAGATGGAGTTGGAAGGATGTTCTCCTGATCATATCACTTATAATATACTTATCCAAGAGTATGCTCGTGGTGGGCTACTCCAGAGAATGGAAAAGCTTTATCAAAGAATGCTTTCAAAAAGAATGCATGTACAATCTTCTACTCTAGTTGCAATGCTGGAGGCTTATACCACATTTGGGATGGTTGAAAAGATGGAAAAATTTTATAGAAAAATCTTGAACTCAAAAACATGTCTAGATGATGATTTGATTAGAAAAGTGGCTGAAGTTTATATCAAGAACTACATGTTTTCTAGATTAGAGGACCTGGCACTAGATTTATGTTCAGCATTTGGTGAGAGCAACCTTGTATGGTGTCTCCGTCTTCTTTCTTATGCATGTCTTTTGAGTAAAAAAGGTATGGATATAGTTGTTCGAGAAATGCGAGATGCAAAGGTTAATTGGAATGTTACTGTTGCAAATATTATCATGTTGGCTTATGTGAAGATGAAAGATTTCAGGCATATGAGAATTTTGCTATCTCAATTGCCAATCTATCGGGTGCGGCCTGATATCATCACTATTGGAATTCTATTTGATGCCAATAGAATTGGTTTTGATGTTAGCGGAGCTTTAGAATCATGGAGGAGAATGGGCTATCTATATAGAGTAGTAGAAATGAAAACAGATTCTCTGGTCCTTACTGCATTTGGGAAAGGACATTTTCTTAAAAGCTGTGAAGAAGTGTACTCTTCCCTTCACCCTGAGGACAGAAAAAGGAAAACATGGACATACCATGATCTCATTGCTTTATTGTCAAAACATACTGGTACCATCGACTGTATAAAACCAAGATAG 1545 0.3935 MVNAVSQSQSHFVVALLNSNCKVSKSSSNSNSNRVFRKPFAKFPSLTTQICHASYHRLPSFADSKHTTLLVETYHLHHSLRALLAKLEREDSNPLHILAEDADWSKDHFWAIVRFLKNASRFTQILQVFDMWKNIEKSRINELNYNKIIGLLCEGGMTEDALSALQEMKVQGIKPSLDTYNPIINGLSREGKFSDALRFIDEMKESGLELDSETYDGLIGAYGKFQMYDEMGECLRKMELEGCSPDHITYNILIQEYARGGLLQRMEKLYQRMLSKRMHVQSSTLVAMLEAYTTFGMVEKMEKFYRKILNSKTCLDDDLIRKVAEVYIKNYMFSRLEDLALDLCSAFGESNLVWCLRLLSYACLLSKKGMDIVVREMRDAKVNWNVTVANIIMLAYVKMKDFRHMRILLSQLPIYRVRPDIITIGILFDANRIGFDVSGALESWRRMGYLYRVVEMKTDSLVLTAFGKGHFLKSCEEVYSSLHPEDRKRKTWTYHDLIALLSKHTGTIDCIKPR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00491 514 Gene3D Tetratricopeptide repeat domain 338 510 IPR011990 GO:0005515
Pumo1g00491 514 Gene3D Tetratricopeptide repeat domain 95 236 IPR011990 GO:0005515
Pumo1g00491 514 Pfam PPR repeat 242 273 IPR002885 -
Pumo1g00491 514 Pfam PPR repeat 145 173 IPR002885 -
Pumo1g00491 514 PANTHER OS08G0520200 PROTEIN 39 506 - -
Pumo1g00491 514 Gene3D Tetratricopeptide repeat domain 237 313 IPR011990 GO:0005515
Pumo1g00491 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Pumo1g00491 514 Pfam PPR repeat family 179 222 IPR002885 -
Pumo1g00491 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Pumo1g00491 514 NCBIfam pentatricopeptide repeat 248 278 IPR002885 -
Pumo1g00491 514 NCBIfam pentatricopeptide repeat 179 211 IPR002885 -
Pumo1g00491 514 NCBIfam pentatricopeptide repeat 145 176 IPR002885 -
Pumo1g00491 514 NCBIfam pentatricopeptide repeat 214 246 IPR002885 -
Pumo1g00491 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Pumo1g00491 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00491 141 412 Glycosyltransferase AT1G05670 20.513 7.88e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00491 - - gmx:100808924 914.45