Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00489 ATGCCATGGATTGTTTACAAATTGCTGTTAGATGAATTGCAAACAGATCAATGGCCGGTTCCGCCTGGGCGCCGCCCTGCACGCTGCACCGGGGTTGCTTTGAGTGTTGCCGCGGGGTTGCTGAGTGCTTGTAATCCTGGGACGGGTGCTAGAATCATAGCTTTGGTTGGAGGGCCATGCACGGAAGGACCTGGCGCGATTGTGTCAAAAGATCTATCTGACCCGGTGCGTTCTCATAAAGATCTTGATAAAGATGCAGCACCATACTTCAAGAAAGCAGTCAAATTTTATGAGGGTCTTGCAAAACAGCTGGTTAGCCAGGGTCACGTTTTAGATATTTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATGAAAGTTGCGGTTGAAAGAACTGGTGGCCTTGTTGTCCTGGCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAGCGAGTTTTTGAGGATGGGGAGCAATCTCTTGGTCTTTGTTTCAATGGAACCCTAGAGATAAATTGCTCCAAGGAAATCAAAATTCAGGGAATTATTGGACCATGCACCTCGTTGGAAAAGAAAGGGCCTTCTGTTGCTGATACTGTTATAGGAGAGGGAAACACAACAGCATGGAAGATGTGTGGCCTTGACAAGAGTACATGCTTGACTGTGATGTTTGATCTTTCATCAAGTGATCGTTCAAACACCCCAGGTGCTGTCAACCCACAATTGTACCTACAGTTCCTTACAAGTTACCAGGACCCAAGTGGTCAATCAGTGCTTCGTGTCACAACAGTAACTAGAAGATGGGTAGATAGTTCTGTTAGCTCTGAGGAATTGGTTCAAGGATTTGACCAAGAAACTGCTGCAGTTGTAATGGCTAGATTTGCTTCTCTGAAAATGGAGAGTGAGGAAACCTTTGATGCTACACGGTGGTTGGATCGGTTTCTCATTCGCCTCTGTTCTAAGTTTGGTGACTACCGCAAGGATGATCCATCATCTTTTACATTAAACCCATCATTTTCACTTTTCCCTCAGTTTATGTTCAATCTGCGACGCTCACAGTTTGTACAGGTTTTTAACAACAGTCCAGACGAGACTGCATATTTCCGTATGTTGTTAAACAGGGAAAATATTAGTAATGCTGCCGTTATGATTCAGCCGTCATTGATATCTGTGGTTGTTTTTCATGGGATGACAATAGCTCAATGGCGCAACTTGGGATACCAGAACCAACCAGAACACCAGGCATTTGCACAACTATTACGAGCTCCGCATGATGATGCCCAAATGATAATTAGAGAACGGTTCCCGGTTCCTAGATTGGTAGTGTGTGACCAACATGGTTCCCAGGCTAGATTTTTATTAGCAAAACTGAATCCCTCAGCAACGTATAATAATGCACATGAGATGGCTGCTGGTTCAGATGTAATCTTTACTGATGATGTGAGCCTTCAAGTTTTCTTTGAGCATCTGCAAAGGTTGGCTGTCCAATCTTGA 1500 0.4427 MPWIVYKLLLDELQTDQWPVPPGRRPARCTGVALSVAAGLLSACNPGTGARIIALVGGPCTEGPGAIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDIFASALDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIIGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRSNTPGAVNPQLYLQFLTSYQDPSGQSVLRVTTVTRRWVDSSVSSEELVQGFDQETAAVVMARFASLKMESEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISVVVFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPHDDAQMIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00489 499 Gene3D Sec23/Sec24 helical domain 272 395 - -
Pumo1g00489 499 SUPERFAMILY Helical domain of Sec23/24 285 387 IPR036175 GO:0006886|GO:0006888|GO:0030127
Pumo1g00489 499 Gene3D von Willebrand factor, type A domain 5 160 IPR036465 -
Pumo1g00489 499 SUPERFAMILY vWA-like 9 157 IPR036465 -
Pumo1g00489 499 Pfam Gelsolin repeat 396 455 IPR007123 -
Pumo1g00489 499 Pfam Sec23/Sec24 trunk domain 8 156 IPR006896 GO:0006886|GO:0006888|GO:0030127
Pumo1g00489 499 FunFam Protein transport protein SEC23 358 461 - -
Pumo1g00489 499 FunFam Protein transport protein SEC23 282 418 - -
Pumo1g00489 499 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 371 498 IPR036180 -
Pumo1g00489 499 Gene3D Severin 396 461 IPR029006 -
Pumo1g00489 499 SUPERFAMILY beta-sandwich domain of Sec23/24 168 284 - -
Pumo1g00489 499 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 9 392 IPR037364 -
Pumo1g00489 499 Gene3D Sec23/Sec24 helical domain 462 496 - -
Pumo1g00489 499 FunFam Protein transport protein SEC23 155 271 - -
Pumo1g00489 499 Gene3D - 161 271 - -
Pumo1g00489 499 Pfam Sec23/Sec24 helical domain 285 381 IPR006900 GO:0006886|GO:0006888|GO:0030127
Pumo1g00489 499 Pfam Sec23/Sec24 beta-sandwich domain 167 271 IPR012990 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00489 Pumo-Chr1 6454336 6460601 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00489 K14006 - gmx:100789860 940.643