Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00484 ATGGCGCCTCCCATTCCGAAAGTTCTGATGGTCGCAGAGAAGCCTAGCATCGCTCTCTCTATTGCTTCTGTTCTCTCTCGCGCTCAGATGTTTACAAGAAGGGGAAGCACGGAAGTTCATGAATTTGAGGGAAAGTTTCTTGGATCGCCTGCATATTTTAAAGTAACATCAGTTATTGGGCATGTATTCAGTGTAGATTTCCCTGGTAAATATCAAGATTGGTCTGCCACAGATCCATTAGATCTTTTTCAGGCTCAGGTTATAAAGGCTGAATCAAACCCAAAGGCACATATTTGTAGACATTTAAATCAAGAAGCTCGTGGATGTCGTTATTTGGTATTGTGGTTAGATTGTGATCGTGAAGGAGAAAATATATGTTTTGAGGTTATAAAGTCTACTGGTTTCAATTTAAATGATACTTATCGTGCACGGTTCTCTTCTGTTACTGAGAAAGATGTTGTGAAGGCTCTAGACAACCTTGTCAGACCCAACAGAGATGAGGCGCTGGCTGTAGATGCTAGGCAAGAGATAGATTTGAAAGTTGGAGTTGCCTTTACTCGATTTCAAACGAGTTATTTCCAGGGAAAATATGGGAACCTAGATTCCAGAGTCATCTCCTATGGACCGTGTCAAACTCCTACCTTAGGATTTTGCGTGCAGCGATATTTACAAATAAACACTTTCAAGCCAGAAAAGTTTTGGAGTTTGCATCCTTACATAATTCAAAGTGGCTATGAAATTCAGCTAGAATGGCAACGTGGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAGCTGGTTTCCGAAGATGGACTTTTGGAAGTTACTGAAATATCAGAAAAACAAGAAACCAAAAGTCGCCCTGTTGGTCTAAACACAGTGAATCTTCTAAAGGTTGCTTCAAGTGCTCTGGGATTTGGACCTCAGATGGCTATGCAACTAGCTGAACGGTTGTATACTCAAGGTTTCATCAGGTTTTCTCACTATCTCTATCCACGCACGGAAAGCACGGCATACCCTCCTTCATTTGACTTCTGTGGTGTACTCTCTGCACAAACAAATAATCCAACATGGGGTAGTTATGTACAAGGGCTACTTACCAATGGTTATCAAAAACCTCGATTGGGAACAGATGCAGGTGACCATCCTCCCATTACTCCAATGAGATCAGCAGCAGAAGATATGCTGGGCAATGATGCTTGGAAGCTGTACCAATATATTTGTCAACACTTTATAGGGACAGTGTCTCCGGACTGCAAGTATATAAGGAGAAAGGTTGAATTTTCCATTGGCGGAGAGTCCTTTCATTGTACAGGGCAGCATGTTGTCACCAAAGGATTTACTGCTATTATGCCTTGGTTGGCCATAAATGATAAAAATATTCCATCATTTATAAAAGGGCAGAAAATAGAAGTATCAAAATTGGAGCTCTATGAGGGGAGTACCAGTCCTCCAGATTACCTTACTGAAAGTGAGCTGATATCCCTGATGGAGAAGAATGGAATAGGAACAGATGCATCAATTCCTGTACATATTAACAACATATGTGAGCGGAATTATGTGCAGGTACAAGCAGGCAGAAAGCTTGTCCCAACCACATTAGGCATAACATTAGTAAGAGGTTACCAAACAATAGATCCAGATCTCTGCCTGCCTGATATTCGTAGCTTCATCGAGCAACAAATTACTCTTATTGCTAAGGGTCAGGTGGATCATTGTCATGTGGTGCAGCATGTAATCCAACAGTTCACGCAGAAGTTTAGTTACTTTGTCAAAAAGATTGAAGACATGGATGCATTATTTGAAGCACAGTTTTCTACACTTACTGATTCAGGGCGTATTCTGAGTAAATGTGGTAAATGCTTGAGATATATGAAGTACATTTCTACTCAGCCATCACGATTGTATTGTGGTACATGTGAGGAAGTTTATTATCTTCCACAGAAAGGCACAATCAAGTTGTACAAAGAATTGTCTTGTCCTCTAGACAATTTTGAGCTTTTGATCTGCTCCATGCCTGGCCCAGATGGTAAATCGTTCCCACTATGCCCATACTGCTACAGCAATCCCCCATTTGAAGGTATTGAAACACTCATCAATACGGCTAAAACTGGTACTTCTGGCAAGATAGGCAAGGGAGCTGGCATGCCCTGCAACCTATGCCCTCATCCCACTTGCCCAAATTCTCTGGTTTCCCAGGGTGTATGTGCTTGTCCAGAGTGCAGTGGAACACTTGTCTTAGACCCAGTAAGTGCTCCCAGATGGAGACTTTGTTGCAATATGTGCAATTGCCTAGTTTTTCTTGCACAAGGTGCTCATAGAATCTCCACAACTAAAGAGCGATGCCCTGAATGTGACTCCTCAATCATAGAAGTGGACTTCAACAAGAAAACAACTCCTCTGGAAGACGGAGCTACCTTGCACCGTGGTTGCATTCTATGTGATGAGTTGCTACATTCCCTTGTGGAAATGAAACATGGTAGAAGTTTCAGGCATATGAGTTCACGAGGAAGAGGTAGAGGAGCAAGAAAAGGTGGAAGGGGCAGAGGACGCGGGGGTGGAAAAATGATGGATCCAAAAATGAGCTTCCGAGATTTCTAA 2607 0.42 MAPPIPKVLMVAEKPSIALSIASVLSRAQMFTRRGSTEVHEFEGKFLGSPAYFKVTSVIGHVFSVDFPGKYQDWSATDPLDLFQAQVIKAESNPKAHICRHLNQEARGCRYLVLWLDCDREGENICFEVIKSTGFNLNDTYRARFSSVTEKDVVKALDNLVRPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQSGYEIQLEWQRGKLFDINVAMMFQKLVSEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFIRFSHYLYPRTESTAYPPSFDFCGVLSAQTNNPTWGSYVQGLLTNGYQKPRLGTDAGDHPPITPMRSAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYIRRKVEFSIGGESFHCTGQHVVTKGFTAIMPWLAINDKNIPSFIKGQKIEVSKLELYEGSTSPPDYLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQTIDPDLCLPDIRSFIEQQITLIAKGQVDHCHVVQHVIQQFTQKFSYFVKKIEDMDALFEAQFSTLTDSGRILSKCGKCLRYMKYISTQPSRLYCGTCEEVYYLPQKGTIKLYKELSCPLDNFELLICSMPGPDGKSFPLCPYCYSNPPFEGIETLINTAKTGTSGKIGKGAGMPCNLCPHPTCPNSLVSQGVCACPECSGTLVLDPVSAPRWRLCCNMCNCLVFLAQGAHRISTTKERCPECDSSIIEVDFNKKTTPLEDGATLHRGCILCDELLHSLVEMKHGRSFRHMSSRGRGRGARKGGRGRGRGGGKMMDPKMSFRDF 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00484 868 SUPERFAMILY Prokaryotic type I DNA topoisomerase 7 629 IPR023405 -
Pumo1g00484 868 FunFam DNA topoisomerase 289 419 - -
Pumo1g00484 868 Gene3D - 2 163 - -
Pumo1g00484 868 SMART topIban2 139 235 IPR003601 GO:0003677|GO:0003916|GO:0006265
Pumo1g00484 868 MobiDBLite consensus disorder prediction 833 852 - -
Pumo1g00484 868 SMART topIaneu2 281 541 IPR003602 GO:0003677|GO:0003916|GO:0006265
Pumo1g00484 868 CDD TOPRIM_TopoIA_TopoIII 7 160 IPR034144 -
Pumo1g00484 868 Gene3D Topoisomerase I, domain 3 229 487 IPR013825 -
Pumo1g00484 868 ProSiteProfiles Toprim domain profile. 7 147 IPR006171 -
Pumo1g00484 868 SMART toprim5 7 138 IPR006171 -
Pumo1g00484 868 Gene3D Topoisomerase I, domain 4 289 419 IPR013826 -
Pumo1g00484 868 Gene3D Topoisomerase I, domain 2 170 589 IPR013824 -
Pumo1g00484 868 FunFam DNA topoisomerase 5 163 - -
Pumo1g00484 868 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 828 IPR000380 GO:0003677|GO:0003917|GO:0006265
Pumo1g00484 868 PRINTS Prokaryotic DNA topoisomerase I signature 205 223 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pumo1g00484 868 PRINTS Prokaryotic DNA topoisomerase I signature 112 125 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pumo1g00484 868 PRINTS Prokaryotic DNA topoisomerase I signature 503 517 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pumo1g00484 868 PRINTS Prokaryotic DNA topoisomerase I signature 405 421 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pumo1g00484 868 MobiDBLite consensus disorder prediction 853 868 - -
Pumo1g00484 868 MobiDBLite consensus disorder prediction 832 868 - -
Pumo1g00484 868 Pfam Toprim domain 8 147 IPR006171 -
Pumo1g00484 868 CDD TOP1Ac 166 589 IPR013497 GO:0003677|GO:0003916|GO:0006265
Pumo1g00484 868 Pfam DNA topoisomerase 163 578 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00484 Pumo-Chr1 6424377 6433831 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00484 K03165 - gmx:100791807 1682.54