Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00480 ATGCCCATCTTCTCTGCAACGTTCGGCTCCTTCACTTCCATCTCCTTCCTCTCAGCTTCACAATCACAATCACACCTTTCTCCCCACAAGTTAACTGTGAAGACCACCCCTTGGCAATGGCAGCATCAATATCACTATCACACTGCTAAAGTCTTGGTCTCTGCCTCTGGCAATACCCAAATTGACCAAAATCCTGACACTGGACTTCTTCAACGCCCTACTCCTCCAGACCCACTCGATGACGCTCGTCAGTCTCGGAGATCGTCAGATTGGAAGGCTGCAAAGACATATAAAGATAGTAAACTCATTTATAATGGTAGGGTTGAAGGTTTTAATTCTGGAGGCCTGCTGGTTCGGTTTTATTCTATTATGGGGTTTCTCCCATTTCCACAATTGAGTCCGGTGCATGCTTGTAAAGAACCAGAGAAATCTATCCAAGAAATTGCACAAGGCTTAATTGGTTCAATCATATCGGTGAAGGTAATTCTAGCGGATGAGGATAACAAGAAATTGATCTTCTCTGAAAAGGAAGCTGCCTGGTCCAAATTTTCAAAACAGGTCAATGTAGGGGACATTTTTGAAGTAAGAGTTGGTTATGTTGAGGACTATGGTGCTTTTGTTCATTTGCGCTTCCCTGACGGTCTTTATCGCCTTACTGGACTAATACACGTCTCAGAAGTGTCATGGGATCTAATTCATGATGTCAGAGATATCTTAAAAGTAGGTGATGAAGTGAGGGCCAAAGTTGTCGGTATTGATTGGGGAAAATCAAGGATTAACCTATCAATTAGACAGCTAGAAGAAGATCCACTTCTAGAAACTCTCGACAAAGATGATTCAGCTGATCCTAATTCTTTGAGCGGTGATGATAGCGGTAGCATTGAGCCTCTTCCAGGGCTTCAAACAATCCTTGAAGAGCTACTACAGGAAGATGGTATATATGATGTAAGAATCAGCCGTCAAGGATTTGAAAAACGAGTGGTCTCGCAAGACTTGCAGCTGTGGCTTTCTAACGCACCTCCCACGAACCAAAGGTTTACTCTCCTTGCTCGGGCTGGAAGACAGGTCCAGGAGATACATCTGACTACATCCCTTGATCAGGAAGGTATCAAGAAGGCATTACAAAGAGTATTGGAGCGTGTCCCCTGA 1149 0.4395 MPIFSATFGSFTSISFLSASQSQSHLSPHKLTVKTTPWQWQHQYHYHTAKVLVSASGNTQIDQNPDTGLLQRPTPPDPLDDARQSRRSSDWKAAKTYKDSKLIYNGRVEGFNSGGLLVRFYSIMGFLPFPQLSPVHACKEPEKSIQEIAQGLIGSIISVKVILADEDNKKLIFSEKEAAWSKFSKQVNVGDIFEVRVGYVEDYGAFVHLRFPDGLYRLTGLIHVSEVSWDLIHDVRDILKVGDEVRAKVVGIDWGKSRINLSIRQLEEDPLLETLDKDDSADPNSLSGDDSGSIEPLPGLQTILEELLQEDGIYDVRISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQVQEIHLTTSLDQEGIKKALQRVLERVP 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00480 382 Gene3D - 91 180 IPR012340 -
Pumo1g00480 382 ProSiteProfiles S1 domain profile. 190 264 IPR003029 GO:0003676
Pumo1g00480 382 ProSiteProfiles S1 domain profile. 101 176 IPR003029 GO:0003676
Pumo1g00480 382 Pfam S1 RNA binding domain 187 264 IPR003029 GO:0003676
Pumo1g00480 382 MobiDBLite consensus disorder prediction 62 90 - -
Pumo1g00480 382 CDD SP5_N 2 87 - -
Pumo1g00480 382 MobiDBLite consensus disorder prediction 273 295 - -
Pumo1g00480 382 PANTHER OS03G0844900 PROTEIN 13 382 - -
Pumo1g00480 382 SUPERFAMILY Nucleic acid-binding proteins 177 269 IPR012340 -
Pumo1g00480 382 Gene3D - 181 269 IPR012340 -
Pumo1g00480 382 SUPERFAMILY Nucleic acid-binding proteins 103 176 IPR012340 -
Pumo1g00480 382 SMART S1_6 188 264 IPR022967 -
Pumo1g00480 382 SMART S1_6 99 176 IPR022967 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00480 - - gmx:100786308 665.611