Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00463 ATGTCTCGGGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCTCAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACTCCCTCTTCAATATATCTTGGTGTCCCACCATATGGGTCTTCTCTGTTCAATGGATCATCTGTTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAACTATGGTAGTCGCCTTTCTGCTGGCAGTCCTTATAGACCATTGCATTTATCTGGACCTACACCCTACACCGGTGGACCAGTGATTGGAAATGGTGGGATCTATGGAATGCCCCAACTGTTGGATCGGTATGGCCTGGGTGTGCCTATTGGACCTGGGACAATGGGTGCTAGGCCAGGATTTTTTCATGATGACAAGTCACAGAAAAAAGATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTCTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGGCCTCAAAGTCTGACAAAAATTCTAAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAAACTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCTGAGTCTGAAAAATCTCCTTCACCAGCTGCAGATCAAAATGATCAGGTTTGTTGTGTAAAATATTTTCATGTTGACCTTCATTCCTTGTTGCAACAGTTGTTGGTTTTCCAAGAGCAGCTTTGTAACGTAATGAACCTTTTCATATGGCAATCTGTTGTGAAGTTGTCTCTTAAGTGGATTCTAAGGAAAAGCTTCAGTTTTGCTTCCTTTCATTTGGAACCTTTTATTACCCCTTTTTAA 1044 0.4358 MSRVDNRNSSATKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYSSSAPYLGSNTPSSIYLGVPPYGSSLFNGSSVPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPTPYTGGPVIGNGGIYGMPQLLDRYGLGVPIGPGTMGARPGFFHDDKSQKKDATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEKSPSPAADQNDQVCCVKYFHVDLHSLLQQLLVFQEQLCNVMNLFIWQSVVKLSLKWILRKSFSFASFHLEPFITPF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00463 347 Gene3D - 182 223 - -
Pumo1g00463 347 Gene3D - 226 269 - -
Pumo1g00463 347 Gene3D - 14 54 - -
Pumo1g00463 347 MobiDBLite consensus disorder prediction 9 25 - -
Pumo1g00463 347 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Pumo1g00463 347 Pfam Zn-finger in Ran binding protein and others 237 267 IPR001876 -
Pumo1g00463 347 Pfam Zn-finger in Ran binding protein and others 192 221 IPR001876 -
Pumo1g00463 347 SUPERFAMILY Ran binding protein zinc finger-like 184 223 IPR036443 -
Pumo1g00463 347 SMART zf_4 24 50 IPR001876 -
Pumo1g00463 347 SMART zf_4 193 219 IPR001876 -
Pumo1g00463 347 SMART zf_4 239 265 IPR001876 -
Pumo1g00463 347 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 164 227 - -
Pumo1g00463 347 MobiDBLite consensus disorder prediction 218 240 - -
Pumo1g00463 347 FunFam ranBP2-type zinc finger protein At1g67325-like 15 54 - -
Pumo1g00463 347 SUPERFAMILY Ran binding protein zinc finger-like 231 268 IPR036443 -
Pumo1g00463 347 SUPERFAMILY Ran binding protein zinc finger-like 16 54 IPR036443 -
Pumo1g00463 347 MobiDBLite consensus disorder prediction 1 25 - -
Pumo1g00463 347 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00463 Pumo-Chr1 6261377 6265803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00463 181 270 EF-hand Containing Proteins AT1G55040 31.111 5.42e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00463 - - gmx:100798624 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00463 1 6261377 6265803 Pumo1g00463 1 6261377 6265803 ECH