Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00445 ATGTCGTTCGCATCATCATTCTCCTCGATGCTCCGGCACCGCGCCGCCGCGGCTCTCCTCCTCCGGCGCTTCCGCTGCCTCCCAATCGCCGCCCGACAACAACAAAACCCTAACAAGCAAGCCGCCCCGAGCCGCAACCTCCTGAAGGCGAAACAAACACTGAAAGAGTATTCCTCTCTTGCCCCTGTCCTCTCCCTTGAAGACAGCCCCCCTCTCTTGGAATCCCAGGCCATCGGCGTCGTGGCGGCCTCGCAGGCCAACTTCATGCGCGTCATCGTCCCCGAAAACGACGAGCCTTCTCCTTCGTTCCGCGGGGTGGAGCTACTCTGCGTGGTGAGGGCGCTTCTCAAGAAGATTAAGCGCAGGGTCATGGTCGGGGACAAGGTTCTGGTGGGGTCCATCGATTGGGTCGACCGCAGGGGCATGATCGAGAATGTCTTCCACCGAACCTCCGAGATTCTCGACCCTCCCGTTGCCAACGTCGACCACCTTCTCGTCCTCTTCTCGCTCGAACAGCCCAAGCCTGAGCCCTTTACCCTCACGCGCTTCCTCGTCGAAGCTGAATCCACTGGGATCCCTCTCACGCTGGCACTCAACAAGACGGAGCTTGTGGATAAAGAGATCATTAGTTCGTGGAAGGCTAGGTTGCGCAGCTGGGGTTATGAGCCGGTTTTTTGCAGTGTTGAATCTGGACATGGACTTGATCTTCTTGCATTCAAGTTGAGGGATCAAACGACAGTGACTGTGGGGCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAATGCCCTTAGAAGCAATCCTTCCAATGCTGCGGAAGGGGAGAATTGGTTTGAGCCTATTTTGGGAAGCAAGTGGCTTGAGGATCAACGAGTTGGGGAGGTTTCTACCAGAAGCGGTAGAGGGAAGCATACTACTCGCCATGTCTCTCTGCTTCCATTGTCTGAAGGGGGTTTTCTTGCTGATACTCCTGGATTTAACCAGCCTAGTTTATTGAAAGTGACAAAGCAGTCTCTTGCACAGACTTTTCCTGAAATCAGGAAAATGCTTAGTGCGAATGAGACTGAGAAATGTTCATTTAACAATTGCTTGCATCTGGGTGAACCTGGGTGCATTGTGAAGGGAGATTGGGAAAGATATTCCTTCTATTTTCAGCTTCTTGATGAAATCAGAATCAGGGAGGAGTTCCAGCTCAGGACATTTGGAACTAAAAGAGAAGGGGATGTAAGGTTGAAAATGGGAGACATGGGTGTTCAGCAAGCAGAACCACGTTTGGAACCTAAGAAGCATAGGAGACAATCTCGGAAGAGGATTAACCAGTCAATTTTAGATGAATTGGATGATGATGACGACAATTTGCTTGATGAGGAGAATGATCCCATTTTAAGGGCGCTAAGGAATGAAAACTCTTAG 1410 0.5135 MSFASSFSSMLRHRAAAALLLRRFRCLPIAARQQQNPNKQAAPSRNLLKAKQTLKEYSSLAPVLSLEDSPPLLESQAIGVVAASQANFMRVIVPENDEPSPSFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFHRTSEILDPPVANVDHLLVLFSLEQPKPEPFTLTRFLVEAESTGIPLTLALNKTELVDKEIISSWKARLRSWGYEPVFCSVESGHGLDLLAFKLRDQTTVTVGPSGVGKSSLINALRSNPSNAAEGENWFEPILGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDDDDDNLLDEENDPILRALRNENS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00445 469 Gene3D - 72 146 IPR012340 -
Pumo1g00445 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 389 IPR027417 -
Pumo1g00445 469 MobiDBLite consensus disorder prediction 412 441 - -
Pumo1g00445 469 Gene3D - 147 330 IPR027417 -
Pumo1g00445 469 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 48 450 IPR004881 GO:0003924|GO:0005525
Pumo1g00445 469 Coils Coil 466 469 - -
Pumo1g00445 469 ProSiteProfiles EngC GTPase domain profile. 159 326 IPR010914 GO:0003924|GO:0005525
Pumo1g00445 469 NCBIfam ribosome small subunit-dependent GTPase A 123 267 IPR004881 GO:0003924|GO:0005525
Pumo1g00445 469 SUPERFAMILY Nucleic acid-binding proteins 77 149 IPR012340 -
Pumo1g00445 469 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 150 328 IPR030378 GO:0005525
Pumo1g00445 469 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 77 393 IPR004881 GO:0003924|GO:0005525
Pumo1g00445 469 Gene3D Probable gtpase engc; domain 3 332 394 - -
Pumo1g00445 469 CDD YjeQ_EngC 159 387 IPR004881 GO:0003924|GO:0005525
Pumo1g00445 469 Pfam RsgA GTPase 146 330 IPR010914 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00445 Pumo-Chr1 6123740 6127496 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00445 K06949 - gmx:100796145 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00445 1 6123740 6127496 Pumo1g00445 1 6123740 6127496 ECH