Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00422 ATGACGGAAAGTGAGGGAAAGTGCAAGAAAATGGGCAAAGAGAAGAGAGGTGGAAGCCTCCTCGCCTTCACCGGAGCTGCGGCGGTGCTTGCAATTGCGGCGAATCTAGCCATCACAGCAATCAAGTACCACAAGGAAAAAAATGCTAAGAAGAAAGATCTTGCAGGTTCTAAGGTGTGCGTTAATCTATCTGCATCTGAGATTCTTAAGCTGGCAGAGCAAATCGTTGCTAACTCAAACAAGGTCCATAACTCTGTTGCGTCGGTGCCTCTCGACAAGGTTACATATGCAAATGTTATATCACCTCTGGCAGAACTGCAAGCGCAGCAATTCCCACTGGTCCAGTCTTGTGTGTTTCCGAAGATGGTATCTACTCGGGAGGATGTACGCAAAGCAAGTGCAGAAGCAGAGCGAAGAATTGATGCTCATCTTGATGCGTGCAGCAAACGTGAAGATGTGTATCTTGTCATTAAAGCATTTGCAGTAAGGGGGGAGTGGATGAATGCTGAAGCCAAACGCTTTGTTCAAATTCTGGTGAGAGACTTTGAGCGAAATGGATTGAACCTCACAGCAAGCAAAAGAGAAGAGTTGCAGCGTCTAAGGGCTCAGATTGATGAATTAAGCTTTAAATATATCCAAAATCTCAATGACGATAGCAGGTTTCTTCTCTTCACTGAGGCAGAGTTAGCTGGATTACCTCCAGAGTTTCTCAAGGGTTTAGATAAATCGGAAAATGGAAAATTTAAAATTTCCCTGAGAAGTCATCATGTTGCAGCTGTACTTGAATTTTGCAAGGTTGGAACTACCAGGCGGATGGTATCAGGGGCATATGGGAATCGGTGTGGAGAAATCAATGTTTCCATCTTAGAAAGCCTGGTGCAACAGCGCCATAAATATGCTCGTTTACTTGGCTATTCATGCTATGCAGAGTATGCCATCGATGTTAGAATGGCAAAGACACCAAAAAAGGTGTTTGAGTTCCTGAAAGACATATCGACAAGTTTAACTGACTTGGCCATGAAAGAACTTAATATCTTGAAAGATTTGAAGAAGAAAGAGGAAGGGGAGTTTCCATTTGGAATTGAGGACCTACTGTATTATGTAAAACGGGTTAAAGAGCAGGGTTATGATTTGGACTTTGGAGAGATCAAGCAATACTTGCCAATTAGTGTGGTTTTATCGGGGATCTTCAAAATTATCCAAGATCTATTTGGCTTAAGGTTTGAGGAAATTGCAGGAGCTGATGTTTGGCATTGTGATGTCCGTGTTTTTTCAGTGCTGGACTTAGGTTCTAGCGAACTCTTAGGTTATTGCTACCTTGATTTGTTCTCCAGGGAAGGAAAATATGGTCATACTTGTGTTTTGGCTCTCCAGAACAGTGCATTAACAAGCAGTGGGGCACAGCAGATACCAGTTGCATTGCTAATATCTCAGTGTCAGAAGGATGCTGATGGTAGTTCTGGATTATTACGGTTTTCTGAAGTGGTCAGTCTTTTCCATGAGTTTGGCCACGTGGTTCAACAAATTTGCAACCGTGCATCATTTACCAGAATTTCTGGATTATGTGTTGATCCTGACTTTGTGGAAATACCTGCTCAACTGTTAGAAAACTGGTGTTATGAAAGCTATTCTCTCAAGTTGATTTCGGGATATCATCAGGATATTACAAAACCGTTAAAGGATGACATATGCAAATCAATTAAAAGATGGAGGACTTCTTTTTCTGCACTTAAATTGAAGCAAGATATTCTATGCTGTCTTTTTGACCAAATCATACATTCTGCGGATAACATAGACATTCAGGAATTATTCAAGCATCTTCATCCCATGGAGATGTTAGGCTTGCCGATATTAGAAGGAACCAATCCAGCGTCATATTTTCCTTCTACTGTCATTGGTTATGAGGCAGCTTGCTACAATCGTCTATGGAGTGAGGTTTTTGCTACTGATATATTCACCTCAAAGTTCTGCAACGATGTTTCAAACCAGCAAGCCGGCATGCAATTCAGGAACAAGGTATTGGCCACGGCAGGAGTGAAAGATCCTATTGATGTGTTATCAGACTTTCTAGGAAGAGAACCATCAATCCAAGCTTACATTGAGAACAAAGTCAAGTATGTTTTGTAA 2127 0.4165 MTESEGKCKKMGKEKRGGSLLAFTGAAAVLAIAANLAITAIKYHKEKNAKKKDLAGSKVCVNLSASEILKLAEQIVANSNKVHNSVASVPLDKVTYANVISPLAELQAQQFPLVQSCVFPKMVSTREDVRKASAEAERRIDAHLDACSKREDVYLVIKAFAVRGEWMNAEAKRFVQILVRDFERNGLNLTASKREELQRLRAQIDELSFKYIQNLNDDSRFLLFTEAELAGLPPEFLKGLDKSENGKFKISLRSHHVAAVLEFCKVGTTRRMVSGAYGNRCGEINVSILESLVQQRHKYARLLGYSCYAEYAIDVRMAKTPKKVFEFLKDISTSLTDLAMKELNILKDLKKKEEGEFPFGIEDLLYYVKRVKEQGYDLDFGEIKQYLPISVVLSGIFKIIQDLFGLRFEEIAGADVWHCDVRVFSVLDLGSSELLGYCYLDLFSREGKYGHTCVLALQNSALTSSGAQQIPVALLISQCQKDADGSSGLLRFSEVVSLFHEFGHVVQQICNRASFTRISGLCVDPDFVEIPAQLLENWCYESYSLKLISGYHQDITKPLKDDICKSIKRWRTSFSALKLKQDILCCLFDQIIHSADNIDIQELFKHLHPMEMLGLPILEGTNPASYFPSTVIGYEAACYNRLWSEVFATDIFTSKFCNDVSNQQAGMQFRNKVLATAGVKDPIDVLSDFLGREPSIQAYIENKVKYVL 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00422 708 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 63 701 - -
Pumo1g00422 708 Coils Coil 190 210 - -
Pumo1g00422 708 CDD M3A_TOP 69 701 - -
Pumo1g00422 708 Gene3D Endopeptidase. Chain P; domain 1 38 184 IPR024080 -
Pumo1g00422 708 Gene3D Collagenase (Catalytic Domain) 388 538 IPR024079 GO:0008237
Pumo1g00422 708 FunFam Probable thimet oligopeptidase 388 538 - -
Pumo1g00422 708 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 35 702 IPR045090 GO:0004222|GO:0006508
Pumo1g00422 708 Pfam Peptidase family M3 264 701 IPR001567 GO:0004222|GO:0006508
Pumo1g00422 708 Gene3D Neurolysin, domain 3 194 700 IPR024077 -
Pumo1g00422 708 FunFam Thimet oligopeptidase 1 42 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00422 Pumo-Chr1 5900796 5911075 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00422 K01392 - gmx:100793518 1324.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00422 1 5900796 5911075 Pumo1g00422 1 5900796 5911075 ECH