Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00421 ATGTTCAAACAGATATTCAGTAAACTCCCTCGAAAGTCATCGAAAGGTTCCGAACACGGTGGAAGTGGAAGAACCCATCATGGCGTTACCGCGTCTTCGAAGAGCAGTGATTCTGTTAGTGTTACCCCAGGTGGCACCAAACCTGGGAATTCTTCTTCTGCGGGACAGAATCATGGTAACAGAGTTCCGTTACCGTTGGTTGTGAATGAGAACAACATTCACAACAACCCCAATAATGAGAATTTTGGTTCCTATGAGGCATTGCCTGCGTTCAGGGATGTTCCCTCTTCTGAGAAGCCAACTTTGTTCGTCAAGAAGCTTAGGATGTGTTGTGTGGTGTTTGACTTTACTGACCCTGCCAAGCACCTCAAGGAGAAGGAGATTAAGCGGCAGACGTTGGTGGAGCTCGTGGATTATGTGACTTCTGCGAATGCTAAGTTCGCGGAGAATGTGATGCAGGAGGTTGTGAAAATGGTGTCTGCAAATATATTCAGGACGCTTAGTCCTCAGCCGCGCGAGAATAAGATTGTTGATGGTGTTGATGTGGAGGAGGAGGAGCCTTCGATGGATCCTGCTTGGCCTCATTTGCAGATTGTGTATGAGCTTTTTCTGAGGTTTGTGGCATCTCCTGAGCTGGATGCAAAGTTGGCCAAGAGATACATTGATCAGTCCTTCATTTTAAAGCTGCTGGATTTGTTTGACTCTGAGGATCCGAGGGAGCGCGAGTACTTGAAGATGACGCTGCACCGCATCTATGGCAAATTCATGGCGCATCGCCCTTTCATCAGGAAGGCCATCAATAATGTGTTTTTTAATTTTATTTTTGAGACTGAGAAGCACAATGGGATTGCTGAGTTCTTGGAGATTCTTGGAAGCATCATTAATGGTTTTGCACTGCCATTGAAGGAAGAGCATAAACTGTTTCTTGTTCGTATACTGATTCCACTGCACAAGCCAAAGTGCTTGGCAATGTATCATCAGCAGTTGTCTTATTGCATTACCCAATTTGTGGAGAAAGATTGCAAGCTTGCTGATACAATTATTAGGGGATTATTGAAGTACTGGCCTATAACAAATAGTTCAAAGGAGGTTATGTTCCTGGGTGAGTTGGAAGAAGTCTTAGAAGCAACTCAACCCCCAGAATTCCAGCGTTGTATGGTGCCATTGTTTCGTCGCATTGCACGTTGTTTGAATAGCCCTCATTTTCAGGTGGCAGAAAGAGCTTTATTCTTGTGGAACAATGATCACATCATGAACTTGATCAAACAAAACCGAAAAGTGATACTGCCCATCATCTTCCCTGCATTGGAGAGAAATGCTAGAAGTCATTGGAACCAAGCTGTCCATAGTTTGACCTTAAATGTGAGGAAGATTTTTAATGATGTCGATGCCGATCTATCTAAAGAATGTTTACAAAAGTTTGAGGAAGACGAGTCAAAGCAAAGTGAAGTCATAGCAGGGCGTGAAGCCACGTGGAAACGCTTGGAGGAGCTTGCTGCAAAGAAAGCTGCAAGTGGCGAAGCAGTGCTTATTGGTAAAGCACCAACTCGCAACTCTGCAGGTTAG 1566 0.4451 MFKQIFSKLPRKSSKGSEHGGSGRTHHGVTASSKSSDSVSVTPGGTKPGNSSSAGQNHGNRVPLPLVVNENNIHNNPNNENFGSYEALPAFRDVPSSEKPTLFVKKLRMCCVVFDFTDPAKHLKEKEIKRQTLVELVDYVTSANAKFAENVMQEVVKMVSANIFRTLSPQPRENKIVDGVDVEEEEPSMDPAWPHLQIVYELFLRFVASPELDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKMTLHRIYGKFMAHRPFIRKAINNVFFNFIFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQRCMVPLFRRIARCLNSPHFQVAERALFLWNNDHIMNLIKQNRKVILPIIFPALERNARSHWNQAVHSLTLNVRKIFNDVDADLSKECLQKFEEDESKQSEVIAGREATWKRLEELAAKKAASGEAVLIGKAPTRNSAG 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00421 521 MobiDBLite consensus disorder prediction 1 63 - -
Pumo1g00421 521 MobiDBLite consensus disorder prediction 26 59 - -
Pumo1g00421 521 SUPERFAMILY ARM repeat 101 481 IPR016024 -
Pumo1g00421 521 PIRSF PP2A_B56 1 519 IPR002554 GO:0000159|GO:0007165|GO:0019888
Pumo1g00421 521 Gene3D - 95 498 IPR011989 -
Pumo1g00421 521 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 88 499 IPR002554 GO:0000159|GO:0007165|GO:0019888
Pumo1g00421 521 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 504 IPR002554 GO:0000159|GO:0007165|GO:0019888
Pumo1g00421 521 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 95 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00421 Pumo-Chr1 5883843 5889227 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00421 K11584 - gmx:100811438 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00421 1 5883843 5889227 Pumo1g00421 1 5883843 5889227 ECH