Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00403 ATGAATCCTCTGTGCTGCATTGCTCCGGTTTCGATCGATCGGGACCGGGCCAACCCTGTCGTCGCCAAATCGCCCAGTCAGTGTCAGTTAGGGCTCGATGCCTCCATCAGGACCGTCAACTACGCTTCCAAATCCAGCCTCTCCACGCAGGATTCCTCCGTCGGTGCCGATTCCGTCAAGGCCTCCACCGCCGCCGTGGATCTCGAGGAGGACGAGGAGCCGCGCGATTCCAAGGCCTTCGCCGGCGGCGTCGCTGGCAGTGTCGCCGGGATCCTGTACAAGTGGGTGAATTACGGGAAGGGGTGGAGGTCGAGGTGGTTCGTGCTGGAAGATGGCGTGCTTTCGTATTACAAGATTCACGGACCGGACAAGATCTTGGTGAGTCCGGCGAGGGATAGGAGCGTGAGGGTGATCGGAGAAAAGTCATCCAAGTACGTCAAGAAGGCCAATTGGAATCTGAATCGAGCACCTTCTGGAGGAGGTAACAGTAGCAACGGGAAGCAATGCAAACCGTTCGGTGAGATACATTTGAAGGTTTCTTCAGTTCGTTCCAGCAAGTCTGATGATAAGCGGCTTTCCATATTTACTGGGACAAAAACTCTTCACTTGAGGAGTGTGTCTAGAGAAGACAGAGCCATGTGGATTGAGGCCTTGCAGTCTGCAAAAGATCTTTTTCCTAGAGCTCTAACAAGTAGTGATCTTGCAACTTCAGAAGATATCGTAGTTTCGACAGAGAAGCTGCGATCACGATTGTCACAGGAAGGCATAAGTGAAACAATCATTAATGACTGTGAGTCTATTATGCTTTCCGAAGTCTCTTATCTTCAAAGCAAGTTGAAGTTTCTTCAGCATAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGACAGAGAAAATAGAGTTGGAAACTGCTGTAGTGGATGAAACAAAGGAACGTGAATCATACTGTGGACAAGGAAATAGAAGGTTTAGTGATTTCTATTCTGTCATGTCGGAGGGCAGTGCTACTGATTCAGTGGCAGATAATGAAAGTCAAGATGGAGCAGATGTTGAAACAGATGATGAGGATAGAACATATTTTGACACAAATGAGTTTTTGTATTCCGATGCCCTAAGAAGTGCTTCCTATCGAAGTAAGGAAGCTATGGGCAATGCCAGTATATTCGATAGAGATTATATTTGTTATGATGGTGTGCATGGGTTTGAGAAGGAGATCAAAGATGTAAGTTATCCATATGTCAAAAGAAGGGATAACCTACCAGAGCCAAAAGAAAAAGAGAAGCCTGTTGGCTTGTGGTCAATTATTAAAGACAATATTGGGAAGGATCTTTCTGGAGTTTGTCTCCCTGTTTATTTTAACGAACCACTGTCTTCATTGCAAAAGTGTTTTGAAGACCTAGAGTATTCATACCTGGTTGATAGAGCATTGGAGTGGGGAAAGCAGGGGAATGATTTGATGAGAATTCTAAACATTGCAGCTTTTGCTGTGTCTAGCTATGCGTCAACTGAAGGTCGACAATGTAAACCTTTTAATCCTTTACTCGGGGAGACCTATGAAGCTGACTATCCAGATAAAGGACTTCAGTTTTTTTCTGAAAAGGTTAGTCATCATCCAATGGTTGTTGCTTGTCACTGTGAGGGAAGGGGATGGAAGTTTTGGGCAGATTCTAATTTGAAAGGAAAATTCTGGGGGCGTTCTATCCAGTTAGATCCTGTGGGTGTCCTCACTCTACAGTTTGAGGATGGAGAAACATTTCAGTGGAGTAAGGTCACCACTTCCATATACAATATCATACTAGGTAAAATTTATTGCGACCACTATGGTACCATGCACATCAAGGGCAGCGGCAAGTATTCTTGCAAACTGAAATTCAAGGAGCAATCTATTATAGACAGAAATCCACATCAGGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCGATGTTAATTGGGAAGTGGGATGAAGCAATGTACTATGTGCTTGGGGATCCAACCACCAAGCCAAAAGGTTATGATCCGATGACGGAAGCTGCATTATTGTGGGAAAGGGACAACCATGAACCGAAGACAAGATACAACCTCTCTCCTTTTGCAATTTCCTTGAATGAAATATTACCTGGTTTATTAGAGAAGTTGCCTCCAACTGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAATGGAGAATATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACAGGCAAGAAAGATGCAAGAAACAGGATGGCAACCGAGATGGTTTAAGAAGGATGATGATGGTTGTTACCGATATATTGGTGGCTATTGGGAAGCAAGACAAAGGAATAATTGGGACGATATCCCTGATATATTTGGACAGAGTTGTGATTTAGCTTCATGTTCGGAAGAGACTGTATCCTACTGA 2442 0.4439 MNPLCCIAPVSIDRDRANPVVAKSPSQCQLGLDASIRTVNYASKSSLSTQDSSVGADSVKASTAAVDLEEDEEPRDSKAFAGGVAGSVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILVSPARDRSVRVIGEKSSKYVKKANWNLNRAPSGGGNSSNGKQCKPFGEIHLKVSSVRSSKSDDKRLSIFTGTKTLHLRSVSREDRAMWIEALQSAKDLFPRALTSSDLATSEDIVVSTEKLRSRLSQEGISETIINDCESIMLSEVSYLQSKLKFLQHKHVMLLDTLKQLETEKIELETAVVDETKERESYCGQGNRRFSDFYSVMSEGSATDSVADNESQDGADVETDDEDRTYFDTNEFLYSDALRSASYRSKEAMGNASIFDRDYICYDGVHGFEKEIKDVSYPYVKRRDNLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDRALEWGKQGNDLMRILNIAAFAVSSYASTEGRQCKPFNPLLGETYEADYPDKGLQFFSEKVSHHPMVVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFQWSKVTTSIYNIILGKIYCDHYGTMHIKGSGKYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLIGKWDEAMYYVLGDPTTKPKGYDPMTEAALLWERDNHEPKTRYNLSPFAISLNEILPGLLEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKMQETGWQPRWFKKDDDGCYRYIGGYWEARQRNNWDDIPDIFGQSCDLASCSEETVSY 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00403 813 SUPERFAMILY PH domain-like 88 223 - -
Pumo1g00403 813 MobiDBLite consensus disorder prediction 336 355 - -
Pumo1g00403 813 Coils Coil 740 760 - -
Pumo1g00403 813 Gene3D - 729 809 - -
Pumo1g00403 813 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 88 785 IPR000648 GO:0008289
Pumo1g00403 813 Pfam Oxysterol-binding protein 433 785 IPR000648 GO:0008289
Pumo1g00403 813 SUPERFAMILY Oxysterol-binding protein-like 427 799 IPR037239 -
Pumo1g00403 813 Coils Coil 279 313 - -
Pumo1g00403 813 Pfam Pleckstrin homology domain 90 220 - -
Pumo1g00403 813 FunFam oxysterol-binding protein-related protein 1D isoform X1 518 691 - -
Pumo1g00403 813 Gene3D - 85 225 IPR011993 -
Pumo1g00403 813 Gene3D - 518 686 - -
Pumo1g00403 813 FunFam Oxysterol-binding protein-related protein 2A 729 799 - -
Pumo1g00403 813 SMART PH_update 86 225 IPR001849 -
Pumo1g00403 813 ProSiteProfiles PH domain profile. 85 223 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00403 Pumo-Chr1 5714287 5721595 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00403 K20456 - gmx:100788779 1568.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00403 1 5714287 5721595 Pumo1g00403 1 5714287 5721595 ECH