Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00384 ATGACGAAACTGAAAGAGCTGATTGGGATAATGAAGGACAAAGCATCGCAGGGCAAAGCCGCGATCCTCTCCAAACGCACCGCACTCTCTCTCCTCCGCGCCACCAGCCACGACTCCTTCACCCCTCCCACGGGCAGCCACCTCTCCACGCTCCTGTCCTCTGGGGACGGCTCACGCGCCACCGCCTCGGCCGCCGTGGAGCTCCTCACGGAGCGCCTCCAGACCACCCAGAGCTCGGCCGTGGCGCTGAAGTGCCTGATCGTGGTGCACCACGTGATCAAGCGCGGCAGCTTCATCATGAGGGACCAGCTTCCGTACAGCGGCGGCAGAAACTACCTTAACCTGTCCAAATTCAGGGACAGGAGCAGCCCCGTATGCTGGGAGCTATCCTCGTGGGTTCGATGGTACGCTAAACACGTGGAACAGCTTCTCTGGGCTTCGAGAGTTGTCGGGTTCTTACCGACGGAAAAAGAGAGAGTTTCGGGTCTTACGAACGGGGAGTTGTTGAGAGAGACGGAGGCTTTGTTGGCGGTTTTTGAAGGGATTGGAAACATACCCGACGCTGCATCCATCATGGAAGGGAATAAGTTAGTTACCGAAATAGCCACTTTGGTGGAAGAGGATGGGGTTGCTGTGTTGACTGAATTGTTTGTTAGAGTTAACGAGTTTAGGGAGAGGTTGGGGTGTCTAAGTTTTGGAGAAGTGGTGGAGTTGGTTTACGTGTTGAACAGATTGGAGAAGTGCAAAGAGATGGTGATGACGGTAGTGACAGAGATACAGAGATTGTGGGATTCAGTGAGAGAATTGAAGCTGAAGGTAGAGAAGATGGAGGTGTATAGGGAAGAAGAGAAAACGGTGATGACAACACACAGGGCAACAAAGTCAGATAGGTTTGCTCTCACGCTTCTCAATTCCGTTGATTTGGCCCCGTTTCCCTCTGCAAGGTTCTTCTGA 954 0.5346 MTKLKELIGIMKDKASQGKAAILSKRTALSLLRATSHDSFTPPTGSHLSTLLSSGDGSRATASAAVELLTERLQTTQSSAVALKCLIVVHHVIKRGSFIMRDQLPYSGGRNYLNLSKFRDRSSPVCWELSSWVRWYAKHVEQLLWASRVVGFLPTEKERVSGLTNGELLRETEALLAVFEGIGNIPDAASIMEGNKLVTEIATLVEEDGVAVLTELFVRVNEFRERLGCLSFGEVVELVYVLNRLEKCKEMVMTVVTEIQRLWDSVRELKLKVEKMEVYREEEKTVMTTHRATKSDRFALTLLNSVDLAPFPSARFF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00384 317 FunFam Putative clathrin assembly protein At4g40080 3 153 - -
Pumo1g00384 317 Pfam ANTH domain 30 142 IPR011417 GO:0005543
Pumo1g00384 317 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Pumo1g00384 317 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 216 IPR045192 GO:0048268|GO:0072583
Pumo1g00384 317 CDD ANTH_N_AP180_plant 29 147 - -
Pumo1g00384 317 Gene3D - 3 152 IPR008942 -
Pumo1g00384 317 ProSiteProfiles ENTH domain profile. 19 154 IPR013809 -
Pumo1g00384 317 SMART enth_2 25 154 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00384 Pumo-Chr1 5555404 5556684 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00384 - K20043 gmx:100808393 520.776