Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00379 ATGAAGAAAGCCTCCTACCCTAATCCCAACCCCCACGCCACCCCTCGCCGCCACGATTTCCACCGTCAGCCACCACCCTATGGCGGCGGTTGGAGTCCCCGCCCCGTCCACCACCGTCCCTACAACCATTGGAAGCCCCGATTCCACCCCCACGCCGCCCGCCCTCCGGAGCCCTATTTCAGGGTGGAGCTCCGCCTGGGCCGCCGCCCCCTGCGCCGGGACGACGTGGAGGCCCTGATCGACGAATGCCGGTTCAGGCACGAGAATTTCACTTTCTACCCGGTGGACGACGTGGCCGCCGCGCTCAGTTACCGGAGCTGGGAGCAGGCGTGCGACGCCGTCGTTTGGTTCTGGGAGGCGCGGCTCGCGGAGAAGCACGATTTCACGCCGGCGCTGGATTCCAACGTCGTGGTCATAGATGACGTGGAAGTTCGCCTTCGACCGGTGTTCGCGTGGCACGTGAAGGGGGTGATGGAAGGGAAGGAGGTGAAGCGGTGGCTGCAGGAGAGTGAACGGTTGTCGAAGGAGATTGCGCGGGTTTCGAGTTCGCTGAGTAAGCCCTTGCGATTTGGGATGCACAACCAGTTGATGGAGAAGAAGAAAGGACTTGTTGATGAGAAGAACCTGGTTGAAAGGAGGTTGAAGGAGTTTGAGTCTGCAATGGAGTGTATATTGAAGTATTTGGAGGATGGTGATGGTGATGACGTGGAGGGTGTGAATGTGTTTAGGTTTGATGGAGGTTTTGATTGGAAGCGGATTCACTGTCTGATCAAAAGGGAGTGTCGGAGACTCGAGGATGGATTGCCTATTTATGCTTACCGGAGGGATATTCTTCAGGAAATACATTATCAGCAGATAATGGTATTAATTGGAGAGACCGGTTCTGGGAAGAGTACACAGTTGGTACAGTTTCTTGCTGATTCAGGCATTGGTACTGACAAAGCCATTGTATGCACTCAACCTCGCAAGATTGCTGCCAAATCAGTGGCTCAAAGGGTCCAGGAAGAAAGCAGTGGGTGTTATGAAGGCCAATCAATCAAATGTTGTTCTGCATTTTCATCCTCGCATAAGTTTGATTCCAGGATAACATTCACGACAGATCACTGTTTATTGCAGCACTACATGAGTGACGAGAATTTGTCTGGGGTCTCATGCATCATAATTGATGAGGCTCACGAGAGGAGCTTAAATACAGATTTACTGTTGACTTTGTTAAAGAATTTACTTTGTAGGAGGGTTGAAATGCGGCTTATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTGTCTGATTACTTTTATGGTTGTGGAATTTTTCGTGTGCTTGGGAGAAGCTTTCCAGTAGATATCAAATATGTTCCTTCTGACTATGCAGGACATTCTGGTTCTGCTGCTGTTGCCTCGTATGTTTCTGATGTTGTCAGAATGGCAACTGAGATTCACAAAACTGAGAAAGAGGGAACTATTCTGGTGTTTTTGACCTCTCAGATAGAAGTAGAATGGGCCTGTGAAAAGTTTCAAGCTCCCTCTGCAGTCGCTTTGCCCTTGCATGGAAAACTTTCATCTGATGAGCAATTCCGTGTTTTTCAGAACTACCCTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCAGAGACGTCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTGTGGGCTGGTTAAGGACAGCAGATTTGATCCTGGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACCGAGCCTGGTGTGTGCTATAGACTGTACTCGGAAGCTGATTATCAGTCTATGGACCTAAATCAAGAGCCGGAGATTCGGAGAGTTCATCTTGGTGTTGCAGTTTTGAGGATCCTTGCTTTAGGAGTGAAGAATGTGCAGGATTTTGATTTTGTGGATGCTCCTAGTCCTAGATCTATTGATATGGCAATCAGGAATCTAATTCAATTAGGAGCCATTGAACTGAACAATAATGTTCATGATTTAACTTCTGAAGGTTGGTGCTTGGTAAGAATGGGAATTGAACCCAGGCTTGGTAAACTTATTCTTGGCTGTTTCAAACATGGTTTGGGTAGGGAAGGTATCATCCTTGCTGCTGTGATGGCCAATGCTAGTAGCATCTTTTGCAGAGTTGGCAGCGAATTTGATAAACAAAGATCTGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTCTTCACTCTTCTCTCTGTATACAAGGAATGGGAAGCTTTGCATCGAGATAGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCCATGAGGAGGTGCCAAGACACAATTTTGGAGTTAGAAACTTGCCTTGAGCGTGAACACGACCTTGTTACTCCGAGTTACTGGCGTTGGGACCCTTGTATGCCCTCTAATCATGATAAGAATTTGAAAAGGGTAATACTTTCCTCACTTGCTGAGAATGTAGCCATGTACTCTGGCTGCAATCAACTTGGTTATGAAGTGGCACAAACTGGGCAACATGTTCAACTACATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCTAGTTGGGTAGTTTTTGGTGAGCTTCTTTCCATTTCTAATCAATATTTGGTCTGTGTGAGCACATTTGACTTTCAATCATTATACAACCTTTGCCCTGCTCCCCTGTTTGATGTATCCAAAATGGAAGAACGGAAGTTGCAAATGAAGACACTGTCTGGTCTTGGCTGTATTCTTCTCAAGAGATTTTGTGGAAAAGCCAACAGCAATTTGCTTGGTCTTGTTTCACGTATAAGGAAAGCTTGCATGGATGAACGCATCTGCATTGAAGTGAATGTTGACCAGAATGAAATCCACTTATATGCCACTTCAAATGGTATGGATACAGCCCTTGGGTTGGTTAATGGTGTTTTAGAATATGAGAGAAAGTGGTTACGCACTGAATGTATGGATAAGTTTTTGTATCATGGGTCTGGTTTCTCTTCACCTGTAGCTTTGTTTGGGTCAGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGACGTGTGTCATCCAAACATAAATGCAATTGATGACAAGGAGCTCTTAATGTTTTTTGAGAAGAATACCTCTGGTTGCATCTGTGCTGTGCACAAATTTACAAGCAATGTGAAGGATGAAGATAGGGAAAAGTGGGGCAGGATTACATTTATGTCCCCTGATGTTGTCAGAAGAGCTGCTGAGCTAGATGGACAGGAGTTTTGTGGCTCCTCCTTGCAAATTGTTCCTTCACAGTTGGGAGGGGATAAAACATTTTCATTCCCTGCTGTTAAAGCAAAAATTTCCTGGCCTCGTAGGCTTAGCAGGGGATTTGCCATAGTTAAATGTGATATAAAGGATGTCAATTATATCTTGAGAGATTTCTATAACCTTGCAGTAGGAGGGAGGTATGTTCGATGTGAAGTTGGCAAAAAGAGTATGGACAGCGTTGTTATAAATGGGCTTGACAAAGAGCTCTCAGAAGCTGAAATATTGGATGTGCTAAGAACTGCTACAAGTAGAAGGATTTTGGATTTCTTCTTGGTGAGAGGGGATGCTGTTGGAAATCCACCAAGCAGTGCTTTGGAAGAGGCACTCCTTAAAGAAATTTACCCCTTTTTGCCCAAAAGGAACCCTCACATTAGTCCTTGCCGAGTTCAAGTGTTTGCACCTGAGCCTAAGGATGCTTTCATGAGAGCCTTAATAACTTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCATTGGAGCAAATTGAAGGAAAGGTGTTACCTGGATGTCTTTCATGGCAAAAGGTAAAGTGCCAGCAGTTGTTTCATAGCTCGCTGACATTTCCTACTCCAGTGTATCGTGTGATTAAGGAACAACTGGATGAAGTACTTGCAAGCTTCCGGAATTTAAAAGGTCTTGAATGCAACCTGGACAGGACATTTAATGGTTCTCACCGAGTGAAGATAACAGCGAATGCCACAAGGACAGTGGCAGAAGTTAGAAGACCTCTGGAAGAACTATTGAGAGGGGAAACCATTGAGCATGACAGTCCTCACCCCTGCAGTTCTCCAGCTCATGTTGTCCAGGGATGGCTTTAG 4167 0.4545 MKKASYPNPNPHATPRRHDFHRQPPPYGGGWSPRPVHHRPYNHWKPRFHPHAARPPEPYFRVELRLGRRPLRRDDVEALIDECRFRHENFTFYPVDDVAAALSYRSWEQACDAVVWFWEARLAEKHDFTPALDSNVVVIDDVEVRLRPVFAWHVKGVMEGKEVKRWLQESERLSKEIARVSSSLSKPLRFGMHNQLMEKKKGLVDEKNLVERRLKEFESAMECILKYLEDGDGDDVEGVNVFRFDGGFDWKRIHCLIKRECRRLEDGLPIYAYRRDILQEIHYQQIMVLIGETGSGKSTQLVQFLADSGIGTDKAIVCTQPRKIAAKSVAQRVQEESSGCYEGQSIKCCSAFSSSHKFDSRITFTTDHCLLQHYMSDENLSGVSCIIIDEAHERSLNTDLLLTLLKNLLCRRVEMRLIIMSATADAKQLSDYFYGCGIFRVLGRSFPVDIKYVPSDYAGHSGSAAVASYVSDVVRMATEIHKTEKEGTILVFLTSQIEVEWACEKFQAPSAVALPLHGKLSSDEQFRVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDCGLVKDSRFDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYSEADYQSMDLNQEPEIRRVHLGVAVLRILALGVKNVQDFDFVDAPSPRSIDMAIRNLIQLGAIELNNNVHDLTSEGWCLVRMGIEPRLGKLILGCFKHGLGREGIILAAVMANASSIFCRVGSEFDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALHRDRKNKWCWENSINAKSMRRCQDTILELETCLEREHDLVTPSYWRWDPCMPSNHDKNLKRVILSSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSISNQYLVCVSTFDFQSLYNLCPAPLFDVSKMEERKLQMKTLSGLGCILLKRFCGKANSNLLGLVSRIRKACMDERICIEVNVDQNEIHLYATSNGMDTALGLVNGVLEYERKWLRTECMDKFLYHGSGFSSPVALFGSGAEIKHLELEKRSLSVDVCHPNINAIDDKELLMFFEKNTSGCICAVHKFTSNVKDEDREKWGRITFMSPDVVRRAAELDGQEFCGSSLQIVPSQLGGDKTFSFPAVKAKISWPRRLSRGFAIVKCDIKDVNYILRDFYNLAVGGRYVRCEVGKKSMDSVVINGLDKELSEAEILDVLRTATSRRILDFFLVRGDAVGNPPSSALEEALLKEIYPFLPKRNPHISPCRVQVFAPEPKDAFMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKVKCQQLFHSSLTFPTPVYRVIKEQLDEVLASFRNLKGLECNLDRTFNGSHRVKITANATRTVAEVRRPLEELLRGETIEHDSPHPCSSPAHVVQGWL 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00379 1388 Coils Coil 193 220 - -
Pumo1g00379 1388 CDD DEXHc_RHA-like 285 441 - -
Pumo1g00379 1388 PANTHER ATP-DEPENDENT RNA HELICASE 240 904 - -
Pumo1g00379 1388 SMART helicmild6 500 598 IPR001650 -
Pumo1g00379 1388 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 620 663 - -
Pumo1g00379 1388 Gene3D - 620 663 IPR042035 -
Pumo1g00379 1388 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 472 638 IPR001650 -
Pumo1g00379 1388 Pfam Helicase associated domain (HA2) 659 753 IPR007502 GO:0004386
Pumo1g00379 1388 FunFam RBR-type E3 ubiquitin transferase 641 747 - -
Pumo1g00379 1388 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 445 617 - -
Pumo1g00379 1388 Pfam DEAD/DEAH box helicase 276 429 IPR011545 GO:0003676|GO:0005524
Pumo1g00379 1388 SMART ha2_5 658 754 IPR007502 GO:0004386
Pumo1g00379 1388 CDD SF2_C_RHA 446 606 - -
Pumo1g00379 1388 Gene3D - 255 444 IPR027417 -
Pumo1g00379 1388 MobiDBLite consensus disorder prediction 1 33 - -
Pumo1g00379 1388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 819 IPR027417 -
Pumo1g00379 1388 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 384 393 IPR002464 -
Pumo1g00379 1388 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 278 442 IPR014001 -
Pumo1g00379 1388 SMART ultradead3 266 451 IPR014001 -
Pumo1g00379 1388 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 251 444 - -
Pumo1g00379 1388 Pfam Helicase conserved C-terminal domain 479 597 IPR001650 -
Pumo1g00379 1388 Gene3D - 445 617 IPR027417 -
Pumo1g00379 1388 MobiDBLite consensus disorder prediction 1369 1388 - -
Pumo1g00379 1388 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 822 901 IPR011709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00379 Pumo-Chr1 5519806 5527663 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00379 K12818 - gmx:100810008 2537.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00379 1 5519806 5527663 Pumo1g00379 1 5519806 5527663 ECH