Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00351 ATGTCTTCCCTTCAACTGTTGCAACTAACTCGGCATGGCCGGAGTTTTCTGGCTTCAAGGAGGAAAACTTTATTACTTGCATCTGGTATCTTAATCGCTGGTGGAACAGCTGCTTATATGCAATCAAGGTTTAGAGTTAATAAACATGATTTATCTGGCCATTGTAATGGGCACAACAATGATGAAGAAGTAACAGAGGAGAAGGTTGTGAAGGGCGTTAATGCACCAAAAAATAAACAAAAGAAAGGGTTGAAGTCACTCCAAGTTCTTGCTGCAATTCTACTATCTGAGATGGGCAAATTTGGTACTAAGGATCTTTTAGGTTTAGTTGCCATAGCGGTGCTGCGAACTGCTTTGAGCAACAGGCTAGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACGTGTACCATTGTTTCTTCGGCTAATTTCAGAAAATATTCTTTTGTGTTTCCTTTTGTCAACCATTCATTCTACGTCAAAGTATATAACAGGGACTTTGAGTTTACATTTCAGAAAAATATTGACAAAGCTTATCCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATATCGCATGTTGATGGTCGGATAACTAACCCAGAGCAAAGAATTGCCAGTGATGTGCCAAGGTTCTGTTCGGAGTTGAGTGAAATTGTACAGGATGATCTAACGGCAGTTACTGATGGACTTTTATACACTTGGCGGTTGTGTTCATATGCTAGCCCAAAATATGTCGTCTGGATATTGGCGTATGTACTTGGAGCTGGTGCTGCAATCAGAAACTTCTCTCCTTCATTTGGAAAACTTATGTCCAAAGAGCAGCAATTGGAAGGAGAGTATCGACAGCTTCACTCACGATTAAGGACTCACTCAGAAAGCATAGCATTCTATGGTGGAGAGAGAAAAGAAGAAGCTCATATTCAACAGAAGTTTAAAACCTTGGTTAGGCATATGTATAATGTGCTACATGACCATTGGTGGTTTGGCATGATTCAGGACTTATTATTGAAGTACCTTGGTGCTACTGTTGCTGTTATTTTGATTATTGAACCTTTCTTTTCTGGTCATCTAAGGCCCGACAGTTCAACTTTGGGGCGTGCAGAGATGTTAAGCAATCTTAGATATCATACTAGTGTCATAATTTCCTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGTCTCAGTGGGTATGCTGATCGCATTTATGAATTAATGGCTGTATCAAGGGAGCTAAGCTCGGTGGATGAGAAATCTTCCCTGCAAAGAAATGCAAGTAGAAATTGCATAAGTGAAGCTAACTACATTGAATTTGATGGTGTCAAGGTTGTAACACCCACTGGTAATGTCTTGGTGGATGATCTGACTCTTAGGGTTGAATCAGGATCTAATCTTTTGATTACAGGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTTTAGGTGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCTTAATAAGGAGATTTTCTATGTGCCACAAAGGCCATACACTGCTGTAGGAACACTTCGAGATCAGTTGATTTATCCTCTTACTGCAGATCAAGAGATTGAACCACTCACAGATCGTGGGATGGTGAAGCTGTTAAAAAATGTTGACCTTGAATACCTGTTGGACCGTTACCCGCCTGAAAAGGAGGTAAACTGGGGTGATGAACTGTCATTGGGTGAGCAACAGAGATTGGGCATGGCAAGACTTTTTTATCATAAGCCTAAATTTGCAATTCTAGATGAGTGCACAAGTGCTGTCACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTTAGGGCCATGGGAACGTCATGCATTACCATATCACATCGTCCAGCATTGGTTGCATTCCACGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAGGGAGGGCTCTTCTACTGAAATGGGGATTGATACGATGAAGGCATCAGAAACAAAACGACAGAGTGATGCAAAGGCAGTTCAACGTGCATTTTCCATGAGCAAAAAGGATTCTGCATTCTCAAATCCAAAGGCACAGTCATATTTTGCAGAGCTGATATCATCATCTCCATCTATGAATCATACAATTTCACCATCTGCTGTTCCCCAACTCTGTGGTAATACAAGGATATTGCCATTGAGAGTAGCTGCCATGTGTAAAGTATTGGTACCCACTGTACTTGATAAACAAGGTGCACAACTGCTTGCTGTTGCTTTTCTTGTCGTTTCAAGAACATGGGTCTCAGATCGTATTGCATCACTAAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTGTTCTCCAAAGTGCTGCATCTTCTTTCATTGCTCCTTCTATAAGGCACTTGACAGCCAGGCTGGCCCTCGGGTGGCGGATTCGTTTGACGCAACATCTGCTAAAAAACTATTTAAGAAACAATGCATTCTACAAGGTCTTTCACATGACAAGCAAAAATATTGACGCAGATCAGAGGATAACTCACGACTTGGAGAAGTTAACAGCAGACTTGTCTGGATTGGTCACCGGAATGGTAAAGCCATCTGTGGATATTTTGTGGTTCACATGGAGAATGAAGCTATTGACAGGTCAGAGGGGGGTTGCCATACTCTATGCTTACATGTTACTTGGTCTGGGGTTTTTAAGAACTGTTACTCCTGATTTTGGTGATTTGATAAGCCAAGAACAACAACTTGAAGGAACCTTTAGGTTCATGCATGAAAGACTCTGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGAGCTCGAGAAAAAGCTATGGTTGAGTCAAGATTCAGAGAGCTTCTCTCCCACTCTAAATACCTTTTAAAAAAGAAGTGGCTGTTTGGTATACTGGATGATTTTATCACAAAGCAACTTCCTCATAATGTGACTTGGTTGCTGAGCTTATTATATGCTATGGAACATAAGGGAGACCGTGCATCAATAAGTACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGCGACATTCTTGAATTGCACAGAAAGTTTGTAGAGCTTTCGGGTGGTATCAATCGAATTTTTGAGCTTGAAGAACTTCTGGATGCAGCACAGTCTGGGCACTCCATCAATGGCAGTATTACACCTCCAATAAGGGATTATCAAGCTAAAGATGCTATTTCCTTTTCTAAGGTTGATATTATAACCCCTGCCCAGAAGATGTTGGCCAGGGAGTTGACATGTGACATTGAGCTTGGTAAAAGCCTCCTTGTTACTGGTCCAAATGGAAGTGGAAAAAGTTCCATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGTGAGTGGAAGACTCTCTAGACCATCTGAAGATGTGGATCAAGAGGCTGAATCAGGTTGTGGCATCTTCTATGTTCCTCAGCGGCCTTACACATGCTTGGGAACATTGCGGGATCAAATTATATACCCACTGTCCCGTAAAGAAGCAGAGATTAGAGCATTAAAGATGCACGGAAAAGGTGAAAAACATCCTGATCCTAGAAAAATGTTGGACACACACTTGCAAGTTATCCTAGAGAATGTTCGGTTGAATTATCTCCTAGAAAGAGACAACAATGGCTGGGATGCAAATCTAAACTGGGAAGACATTCTCTCTCTCGGAGAACAGCAGAGATTAGGAATGGCACGTCTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAATGCAACTAGCGTTGATGTCGAAGAACATCTATATGGGCTAGCGAACAAAATGGGGATCACAGTTGTTACTTCCTCACAACGTCCTGCTTTAATACCATTTCATTCCATGGAATTGCGTCTGATTGATGGTGAGGGTAATTGGGAACTTCGTTCGATCAAGCAATGA 4011 0.4146 MSSLQLLQLTRHGRSFLASRRKTLLLASGILIAGGTAAYMQSRFRVNKHDLSGHCNGHNNDEEVTEEKVVKGVNAPKNKQKKGLKSLQVLAAILLSEMGKFGTKDLLGLVAIAVLRTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTWRLCSYASPKYVVWILAYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGERKEEAHIQQKFKTLVRHMYNVLHDHWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRELSSVDEKSSLQRNASRNCISEANYIEFDGVKVVTPTGNVLVDDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEIEPLTDRGMVKLLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREGSSTEMGIDTMKASETKRQSDAKAVQRAFSMSKKDSAFSNPKAQSYFAELISSSPSMNHTISPSAVPQLCGNTRILPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRNNAFYKVFHMTSKNIDADQRITHDLEKLTADLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAMVESRFRELLSHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQSGHSINGSITPPIRDYQAKDAISFSKVDIITPAQKMLARELTCDIELGKSLLVTGPNGSGKSSIFRVLRGLWPIVSGRLSRPSEDVDQEAESGCGIFYVPQRPYTCLGTLRDQIIYPLSRKEAEIRALKMHGKGEKHPDPRKMLDTHLQVILENVRLNYLLERDNNGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLANKMGITVVTSSQRPALIPFHSMELRLIDGEGNWELRSIKQ 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00351 1336 CDD ABCD_peroxisomal_ALDP 446 654 - -
Pumo1g00351 1336 Pfam ABC transporter transmembrane region 2 745 1010 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo1g00351 1336 Pfam ABC transporter transmembrane region 2 90 358 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo1g00351 1336 Pfam ABC transporter 1116 1282 IPR003439 GO:0005524
Pumo1g00351 1336 ProSitePatterns ABC transporters family signature. 580 594 IPR017871 GO:0005524|GO:0016887
Pumo1g00351 1336 CDD ABCD_peroxisomal_ALDP 1098 1329 - -
Pumo1g00351 1336 SUPERFAMILY ABC transporter transmembrane region 760 1067 IPR036640 GO:0005524|GO:0016020
Pumo1g00351 1336 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 446 675 IPR003439 GO:0005524
Pumo1g00351 1336 Gene3D - 432 706 IPR027417 -
Pumo1g00351 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1094 1325 IPR027417 -
Pumo1g00351 1336 SUPERFAMILY ABC transporter transmembrane region 114 416 IPR036640 GO:0005524|GO:0016020
Pumo1g00351 1336 Gene3D ABC transporter type 1, transmembrane domain 102 417 IPR036640 GO:0005524|GO:0016020
Pumo1g00351 1336 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1098 1334 IPR003439 GO:0005524
Pumo1g00351 1336 SMART AAA_5 471 650 IPR003593 GO:0016887
Pumo1g00351 1336 SMART AAA_5 1123 1335 IPR003593 GO:0016887
Pumo1g00351 1336 Pfam ABC transporter 463 608 IPR003439 GO:0005524
Pumo1g00351 1336 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 694 1332 - -
Pumo1g00351 1336 ProSitePatterns ABC transporters family signature. 1254 1268 IPR017871 GO:0005524|GO:0016887
Pumo1g00351 1336 Gene3D - 1090 1327 IPR027417 -
Pumo1g00351 1336 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 150 340 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo1g00351 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 650 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00351 Pumo-Chr1 5204959 5219444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00351 1 1336 Acyl Lipid Metabolism Gene Families AT4G39850 78.374 0.0 2152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00351 K25819 - gmx:100813765 2527.67