Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00332 ATGCGGTGGCGGTTGCTGCTTTTGTTGCTCTTGCTGTTGTTGGAGCTAACGGCTCGCGCAATGCCGGTTCCGATCACGTTTTCCGCGCGCCTCGTTCACCGCTTCGCCGACGAAATGAAACCGGTTCGGCCTCCGACCGGCGACTGGCCGGACTGGCGGAGCATGAGCTACTATCAGATGCTTCTCACCGGCGACATTCTCAGGCGCAAGATCAAAGTTGGAGGCACACGCTACCAGCTACTGTTTCCGTCTCACGGTAGCAAAACGATGTCGCTTGGCAACGACTTCGGCTGGTTACATTACACGTGGATTGATATAGGAACACCGAGTACTTCGTTTCTCGTGGCGTTGGACGCAGGGAGTGATTTTCTTTGGATTCCGTGTGATTGCGTACAGTGTGCTCCATTGTCATCGAGTTACTATTCCAATCTGGATAGAGATCTGAACGAGTATAGTCCGTCTCGGTCGTTATCCAGTAAGCATCTATCTTGCAGTCATCGGTTGTGTGATAAGGGTTCAAATTGTAAAAGTTCCCAGCAGCAGTGTCCGTACATGGTCAGTTACTTGTCGGAGAACACGTCAAGTTCTGGATTGTTAGTTGAGGACATACTGCATCTTCAGTCAGGCGGCAGTTTATCAAACTCATCTGTTCAAGCTCCAGTTGTTCTTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGCCTATTAGGTTTGGGGCCTGGGGAGAGTTCAGTTCCAAGTTTTCTTGCTAAATCAGGATTAATCCACGATTCTTTTTCCTTATGCTTTAATGAAGATGATTCTGGTAGAATGTTTTTTGGGGACCAGGGACCAACCGTGCAACAGTCTACTTCATTCTTGCCTTTGGATGGATTATATTCAACCTACATTATTGGAGTACAGTCATGTTGTATTGGGAATTCTTGTCTTAAAATGACAAGTTTTAAAGCACAGGTTGATAGTGGGACGTCATTTACATTTCTTCCTGGCCATGTGTATGGAGCAATAGCTGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATGTACCCAGTTCGCAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCATGTTCCAACAGAATAACAGTTTTGTGGTCTATGATCCCGTGTTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATACAGCCATCTGAAGGAGATATGGGAACAATTGGACAGAACTTCATGACCGGATACCGTTTGGTATTTGATAGGGAAAACAAGAAGCTAGCGTGGTCACGCTCAAATTGTCAGGATCTGAGTCTAGGTAAGAGGATGCCCCTCTCTCCAAATGAGACTTCATCAAACCCATTGCCTACAGATGAGCAACAAAGAACGAATGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCTCACAAACCTTCAGCTGCTCCATCTCGGATGATTTCATCATGCCGGGTACATTGGCATTGCTATTTGTTTCTTCTACTTCTACTTGTGTCTGCCTTTTACTGA 1575 0.4622 MRWRLLLLLLLLLLELTARAMPVPITFSARLVHRFADEMKPVRPPTGDWPDWRSMSYYQMLLTGDILRRKIKVGGTRYQLLFPSHGSKTMSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDFLWIPCDCVQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSHRLCDKGSNCKSSQQQCPYMVSYLSENTSSSGLLVEDILHLQSGGSLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLAKSGLIHDSFSLCFNEDDSGRMFFGDQGPTVQQSTSFLPLDGLYSTYIIGVQSCCIGNSCLKMTSFKAQVDSGTSFTFLPGHVYGAIAEEFDQQVNGSRSSFEGSPWEYCYVPSSQELPKVPSLTLMFQQNNSFVVYDPVFVFYGNEGVIGFCLAIQPSEGDMGTIGQNFMTGYRLVFDRENKKLAWSRSNCQDLSLGKRMPLSPNETSSNPLPTDEQQRTNGHAVAPAVAGRAPHKPSAAPSRMISSCRVHWHCYLFLLLLLVSAFY 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00332 524 Pfam Xylanase inhibitor C-terminal 322 444 IPR032799 -
Pumo1g00332 524 PRINTS Pepsin (A1) aspartic protease family signature 324 335 IPR001461 GO:0004190|GO:0006508
Pumo1g00332 524 PRINTS Pepsin (A1) aspartic protease family signature 420 435 IPR001461 GO:0004190|GO:0006508
Pumo1g00332 524 PRINTS Pepsin (A1) aspartic protease family signature 106 126 IPR001461 GO:0004190|GO:0006508
Pumo1g00332 524 MobiDBLite consensus disorder prediction 453 478 - -
Pumo1g00332 524 PANTHER ASPARTYL PROTEASES 9 441 IPR001461 GO:0004190|GO:0006508
Pumo1g00332 524 Gene3D Acid Proteases 283 450 IPR021109 -
Pumo1g00332 524 ProSiteProfiles Peptidase family A1 domain profile. 100 444 IPR033121 -
Pumo1g00332 524 FunFam Aspartyl protease family protein 1 86 282 - -
Pumo1g00332 524 FunFam Aspartyl protease family protein 1 285 450 - -
Pumo1g00332 524 SUPERFAMILY Acid proteases 94 449 IPR021109 -
Pumo1g00332 524 Gene3D Acid Proteases 87 282 IPR021109 -
Pumo1g00332 524 MobiDBLite consensus disorder prediction 453 480 - -
Pumo1g00332 524 Pfam Xylanase inhibitor N-terminal 101 282 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00332 Pumo-Chr1 4924348 4928534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00332 93 451 Miscellaneous Gene Families AT1G44130 26.178 9.31e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00332 - - gmx:100782209 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00332 1 4924348 4928534 Pumo1g00332 1 4924348 4928534 ECH