Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00330 ATGTCGCCAAAATATCAGATTCTTGACAATCGCCCCATTCATCAGTGGAAGGTTACAGAGCTGAGAGATGAGCTGAAGAGGAGGAAGTTAAGTACCAAGGGTTTGAAGGATGATTTGGTCAAGCGTTTGGATGAAGCCGTTCGTCTTGAAAGAGAGGCTTATGAGGCTTCTCAGAAGGAGGAGGCCAATGGTTTTGATGGTCATGTAGATGGGGAAAAAGATTTGGAGGCAGTTACTGTGGATGCTGAAATGGTTGATTCAACCGACAGGGACAGTGCCAAAACATTTGAGACTGCTGAAAAGGGGAAGAGTGGCATAGTCGAACCAATTGAAACGGAAAATGTGGAAAAGATTCCGGAGGTTGTGGATCATGACAGCGATAAGAATGACAAGCAGGATGGTGGTGCCATCCAAGTTGACATTAATAATAGTGTGCCAGCCATGGATCAAGAAGTTGAACATAAGGGCTTGCCAGCTAGTGGAGATTCTGCAAATGTGGGAGAGGAGGCAATTGCCCATGCTTCTACTGTGGAGACCACCATTACAGTCACTGAGAGTGTAGTAACAGAAGTAGTAGCCAGTGGTGAGGATTCTTATCGTGCAGAAAAGAATAATGAGGATTCAGGAGCAAAGCTGGAGAATGAGGAGTCAAAGGCGCAGCTGGATGGTGAGGACACAAAGCCCCAACTGGATTGTGACACCAAGCCCTTGCACGAGGATCCTGTGCCCGACTCTTCTGTTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTCTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAAGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTCTTATGATGAATCACATTCAATGGATGTTGGAGGGCTGCATGAGAAAAAGGCATCTGTTGAAGAAAATATCAATAATGTTTCAAGTCCAGACTTGAACAAGACCAATAGCAGTGATGATGTGGGGTATCCAGAAAAGTTGAACTTGGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCCTGAGACTAAGCAAATTGATTCTAAGTTTAATGTTGATGAACTTAGAGACAAAGTAGAGAGTATTGAAGAGCCTATTGTGAAGGAGGAAAGTAGTAATATACCTGTTGGAGATGGTCTGTCTGCAGGAAAAATTGATACCCACCAAGATATTGACATTAGTCCTGTTGCCCCGACTGAGAAACGAAAATTTCATGAACAAGCATCAGTTGGGAACAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGAAACAGTTAAAGGTCCAGATGCACCAAGCACTACTCCCAGGCCTGCTACTACACCTAGAGATGAGCCAGTTGCTCTGAAGCGCAACTTCTCTAGGTCTGATTCCTCTGCAACTGATGATACACCTAAAGAACGCATTGTTCCACCATCACAAAGGTCCCCAACTAATTCCCTCAGGATTGATCGTTTCCTCCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGTAAGACTGGGAATGTCAGCAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCATCTGTGGAAGAAGCCATTGAGACACGGAATGCTGTGTATAATTTGCAATGGCCGCCAAATGGTGGGCGTCTCTTAGTTGCTGAGTATGTTGACCCCGAAGAAGTGAAAATGAAGTTAGAACCTCCTCCTACTCAGGCTGCCTCTGCCAGCGCAGCTCCAGCAGTTCCTCCTGCACCCCCCTCTTCACAGCCAGAGCCTTCCCCCCGTCTGCACAGGGAGCAGCATCCAGTTCCAGGTACTCTCCCACCTCCACCACCATTGTCAAAACCCCCACCAGTAGCAAGAGAACGGCTTCCATCTCCACCACCCTTTCCTGAGAAAGTTGACCCACCTATTGTCACTCTGGATGATCTCTTCCGCAAGACCACAGCAACTCCTCGGATCTACTATCTACCTTTGTCTGAAGAGCAAGTTGCCGCAAAACTTGCAGCGCAGGGTAAAAGCGTGAGGCAGTAG 2130 0.4554 MSPKYQILDNRPIHQWKVTELRDELKRRKLSTKGLKDDLVKRLDEAVRLEREAYEASQKEEANGFDGHVDGEKDLEAVTVDAEMVDSTDRDSAKTFETAEKGKSGIVEPIETENVEKIPEVVDHDSDKNDKQDGGAIQVDINNSVPAMDQEVEHKGLPASGDSANVGEEAIAHASTVETTITVTESVVTEVVASGEDSYRAEKNNEDSGAKLENEESKAQLDGEDTKPQLDCDTKPLHEDPVPDSSVPENQVSEVNPSLGSQVKSDSISTDSLSINQKNELKDTIITDNVKLEQDIVKPEMVEEPSSRNDVPVSYDESHSMDVGGLHEKKASVEENINNVSSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETKQIDSKFNVDELRDKVESIEEPIVKEESSNIPVGDGLSAGKIDTHQDIDISPVAPTEKRKFHEQASVGNNEPAKRQRRWNTETVKGPDAPSTTPRPATTPRDEPVALKRNFSRSDSSATDDTPKERIVPPSQRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEPPPTQAASASAAPAVPPAPPSSQPEPSPRLHREQHPVPGTLPPPPPLSKPPPVARERLPSPPPFPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSVRQ 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00330 709 SMART sap_9 13 47 IPR003034 -
Pumo1g00330 709 SUPERFAMILY SAP domain 13 50 IPR036361 -
Pumo1g00330 709 MobiDBLite consensus disorder prediction 484 500 - -
Pumo1g00330 709 MobiDBLite consensus disorder prediction 78 136 - -
Pumo1g00330 709 Coils Coil 40 60 - -
Pumo1g00330 709 CDD RRM_ACINU 514 594 IPR034257 -
Pumo1g00330 709 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 3 708 - -
Pumo1g00330 709 MobiDBLite consensus disorder prediction 113 134 - -
Pumo1g00330 709 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Pumo1g00330 709 Gene3D SAP domain 13 62 IPR036361 -
Pumo1g00330 709 MobiDBLite consensus disorder prediction 284 305 - -
Pumo1g00330 709 SUPERFAMILY RNA-binding domain, RBD 508 596 IPR035979 GO:0003676
Pumo1g00330 709 MobiDBLite consensus disorder prediction 335 355 - -
Pumo1g00330 709 MobiDBLite consensus disorder prediction 196 242 - -
Pumo1g00330 709 MobiDBLite consensus disorder prediction 246 283 - -
Pumo1g00330 709 MobiDBLite consensus disorder prediction 635 667 - -
Pumo1g00330 709 MobiDBLite consensus disorder prediction 598 669 - -
Pumo1g00330 709 MobiDBLite consensus disorder prediction 193 516 - -
Pumo1g00330 709 MobiDBLite consensus disorder prediction 357 402 - -
Pumo1g00330 709 Pfam RNSP1-SAP18 binding (RSB) motif 665 706 IPR032552 -
Pumo1g00330 709 MobiDBLite consensus disorder prediction 78 98 - -
Pumo1g00330 709 Pfam SAP domain 15 46 IPR003034 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00330 K12875 - gmx:100786288 1210.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00330 1 4897010 4901129 Pumo1g00330 1 4897010 4901129 ECH